PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02317.1.g00110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 214aa    MW: 23715.5 Da    PI: 6.7987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02317.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-1974123356
                             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                     y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae Aa+a+++a+++++g+
  Zmw_sc02317.1.g00110.1.am.mkhc  74 YRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRGA 123
                                     9*******.**********843...4*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.59273130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3173131IPR001471AP2/ERF domain
SMARTSM003801.9E-3673136IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2273131IPR016177DNA-binding domain
PfamPF008471.9E-1274122IPR001471AP2/ERF domain
CDDcd000183.91E-1574131No hitNo description
PRINTSPR003672.5E-117485IPR001471AP2/ERF domain
PRINTSPR003672.5E-1196112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MCGGAIISEY IPHRAAGGSK RRSLCAADFW PEAAAADFGV DPVNHEHATG ASYPVADQEA  60
DAEPARKRER KTMYRGIRRR PWGKWAAEIR DPAKGARVWL GTFATAEAAA RAYDRAARRI  120
RGAKAKVNFP NEDPPPDNDE DAAIIHVDYD AVMGFFHHQQ LPYVPDAVPI AAAPEVAYVH  180
HHHQQQHQLQ IPQQHNDAGM ELWTFDNIGT AVPM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2274130663ATERF1
3gcc_A2e-2274130663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16472ARKRERKTM
26680KRERKTMYRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644689.11e-66ethylene-responsive transcription factor RAP2-3
SwissprotP427363e-39RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLQ7Y0474e-67Q7Y047_ORYSJ; AP2 domain transcription factor EREBP
STRINGORUFI07G27120.13e-66(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Publications ? help Back to Top
  1. Bueso E, et al.
    The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.
    Plant J., 2007. 52(6): p. 1052-65
    [PMID:17931347]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen YC, et al.
    Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance.
    Sci Rep, 2014. 4: p. 5584
    [PMID:24998294]
  4. Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB
    Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis.
    New Phytol., 2015. 208(2): p. 442-55
    [PMID:25988998]
  5. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  6. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  7. Liu W, et al.
    Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.
    Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868
    [PMID:28390898]
  8. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]