PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02302.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 389aa    MW: 42931.6 Da    PI: 7.5503
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02302.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.31e-5181351128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                     lp+GfrFhPtdeel+v+yL +++++ ++++  +i+ev+iy+++PwdLp k+  +e+ewyfFs+rd+ky++g+r+nra+ 
  Zmw_sc02302.1.g00040.1.am.mkhc   8 LPAGFRFHPTDEELIVHYLMNQAAAVPCPV-PIITEVNIYQCDPWDLPPKALFGETEWYFFSPRDRKYPNGTRPNRAAG 85 
                                     799***************************.88**************96666789************************ PP

                             NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     sgyWkatg+dk+++s+ ++e++g+kk Lvfy+g+ pkg+ktdW+mheyrl
  Zmw_sc02302.1.g00040.1.am.mkhc  86 SGYWKATGTDKAIVSApTSENIGVKKALVFYRGKPPKGVKTDWIMHEYRL 135
                                     **************9989999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-643165IPR003441NAC domain
PROSITE profilePS5100559.1358165IPR003441NAC domain
PfamPF023656.4E-269135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MATRMPSLPA GFRFHPTDEE LIVHYLMNQA AAVPCPVPII TEVNIYQCDP WDLPPKALFG  60
ETEWYFFSPR DRKYPNGTRP NRAAGSGYWK ATGTDKAIVS APTSENIGVK KALVFYRGKP  120
PKGVKTDWIM HEYRLTVANN KSTRRRGSSS SMRLDDWVLC RIYKKSNNFQ YFSDLQDQDG  180
SSTVEEPDSS LNNNSMTMNN GGAPSPKSEE AAHANGDGQQ QFHDPGHLTT SMTKSCSLTD  240
LLNTIDYSTL SQLLLDAPPA ETDHRTQLQQ SPLIYTTPAW QQPHNNYNNY SCNMNNTATS  300
VNMAQDYGAS YNGLKRKRVM TTDGAAGSFD DGGSSLKRKL QLPSDSRTGS GFFFGSSSGG  360
SYCNQQLAEA ASTGGFQYSG LLSHPFLNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-73717014173Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828039.11e-162NAC transcription factor 29-like
SwissprotK4BNG79e-83NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A2S3IC671e-160A0A2S3IC67_9POAL; Uncharacterized protein
STRINGSi026530m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]