PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02288.1.g00100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 538aa    MW: 55942.8 Da    PI: 6.8441
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02288.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.99.2e-35193288183
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............sss 68 
                                   a+g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l  +               +
  Zmw_sc02288.1.g00100.1.sm.mk 193 ATGRKDRHSKVCTSRGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKEAIDKLEVLpawqptnnaaagaALP 273
                                   589**************************************************************7766655544444222 PP

                           TCP  69 saseceaesssssas 83 
                                   ++s++ ++s ++s++
  Zmw_sc02288.1.g00100.1.sm.mk 274 PSSSTHPDSAENSDD 288
                                   222332222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.0E-31194270IPR005333Transcription factor, TCP
PROSITE profilePS5136933.126196254IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MRIAAVAASA AKVVAANQAG DLDPRHHHRV AHGGDGAGGG GGGGGGEADE QQQQHNHRLL  60
QFHQEEQDQE PPSAPVFQLQ HLQATALSRQ RASSAEYALL ASMGDAGQSH SHSHLHHGGF  120
QPQLLSFGGV GQQHHHHLHQ FTAQAPAGAS HSRSRAAGGG GGGEAVPASQ SSSRVRSAGG  180
EIVAVQGGHI VRATGRKDRH SKVCTSRGPR DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV  240
DWLIKNAKEA IDKLEVLPAW QPTNNAAAGA ALPPSSSTHP DSAENSDDQA QAITVAHAGF  300
DFPTRAEGGG AAGAGGGTAF LPSSLDSDSI ADTIKSFFPV GGGTAGGEAS SSTAVARHSS  360
AMRFQSYTPD LLSRTGSHSQ DLRLSLPDPP MFQHQQQEHD HGGNGSTQQA LFPGAGSYSF  420
GVWAEQAQSQ RTLPWSVPDP GGGSGYLFNV SQQAAALGGQ SQFLFQRGPL QSSTEPSDRG  480
WPESVEADNP MSAIGFAPGI GFSGFRVPAR IQGEEEHNGS GNGDKPPPPP AVSSASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-20201254154Putative transcription factor PCF6
5zkt_B3e-20201254154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM141e-166PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A1D6MFZ20.0A0A1D6MFZ2_MAIZE; Transcription factor TCP4
STRINGAC205574.3_FGP0060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355