PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02285.1.g00080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 555aa    MW: 60449.4 Da    PI: 6.8783
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02285.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.81.2e-541492781129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknrat 78 
                                   +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++     + e++ewyfFs +d+ky+tg+r+nrat
  Zmw_sc02285.1.g00080.1.am.mk 149 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQEhcgIGYDEQNEWYFFSYKDRKYPTGTRTNRAT 228
                                   69****************************.9***************953432234677********************** PP

                           NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                    +g+Wkatg+dk+v++ k++l+g++ktLvfykgrap+g+ktdW+mheyrle
  Zmw_sc02285.1.g00080.1.am.mk 229 MAGFWKATGRDKAVHD-KSRLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 278
                                   ****************.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-57146287IPR003441NAC domain
PROSITE profilePS5100556.488149336IPR003441NAC domain
PfamPF023653.5E-28150277IPR003441NAC domain
SuperFamilySSF1019414.45E-57324336IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MVSFCAMEFL DQATERSEAV QATETHLLLV LPGFSLAILP RPVHARHAFV APLDGGDGGP  60
VVAFPLLPAA PPALSKVLNY HARRPACMQL SKVVQARALP PPAARQKLAN AISFCYLHYL  120
QGSGVAESDA HTYSGAAPGD HMDSMESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV  180
IRDIDLYRIE PWDLQEHCGI GYDEQNEWYF FSYKDRKYPT GTRTNRATMA GFWKATGRDK  240
AVHDKSRLIG MRKTLVFYKG RAPNGQKTDW IMHEYRLETD ENAPPQARSL APLLVIYLLV  300
SGSVNVLARA ISRFTPNKLV VVLQEEGWVV CRAFKKRTAY PARSMALAWD SSFAYRDPNV  360
MVGATAAEAA AFVDPNEAYA QIRRQSSKNA RFKQEAELDG AAAFLQYSSH LVELPQLESP  420
SAPLAPNTSH ASTEEGGSGG GRRSKKARAD KVATDWRALD KFVASQLSPG EGGDIEATAS  480
AAAAGEGSQL DHGCEEDMAA LLFLNSDGRE EVERWTGLLG PASAPVATCD PSLLTNFVVG  540
PSPAGGAADL RRGRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-4614627712140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678630.10.0NAC domain-containing protein 37 isoform X1
SwissprotQ9SL411e-114NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A368SWG20.0A0A368SWG2_SETIT; Uncharacterized protein
STRINGPavir.Ib00161.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]