PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02266.1.g00170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 497aa    MW: 53810.7 Da    PI: 4.5089
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02266.1.g00170.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.31.6e-49171531128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya........ 69 
                                     l+pGfrFhPtdeelv++yL+++++g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k +        
  Zmw_sc02266.1.g00170.1.am.mkhc  17 LAPGFRFHPTDEELVSYYLRRRIAGRRLRV-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKITgagaggrg 94 
                                     579***************************.99***************5448999999***********9977777766 PP

                             NAM  70 .tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                       g+r+nrat +gyWk+tgkd+ev++ +g+ vg+kktLvf++grapkg +t+Wvmheyrl
  Zmw_sc02266.1.g00170.1.am.mkhc  95 gPGNRTNRATPQGYWKTTGKDREVFH-RGKPVGMKKTLVFHNGRAPKGARTNWVMHEYRL 153
                                     5567**********************.999****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-5214159IPR003441NAC domain
PROSITE profilePS5100550.36617173IPR003441NAC domain
PfamPF023654.3E-2719153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MSNQSPLDSS PPAEVPLAPG FRFHPTDEEL VSYYLRRRIA GRRLRVDAIA EVDLYRLEPW  60
DLPSLSRIRS RDAQWYFFAR LDRKITGAGA GGRGGPGNRT NRATPQGYWK TTGKDREVFH  120
RGKPVGMKKT LVFHNGRAPK GARTNWVMHE YRLLDADGPQ NGAQYGAPYM EEEWEEDDDA  180
IEKGAIIGAS TKVAATSDTA DEELNEEEEN GDCKTSELAQ ADEILNLPVV AAPQAQGLNE  240
TSDGSCADGA IFLEEILSST VNVENITGPD GQNGTDDNFS VADFSGCLTK DDGYIENDFK  300
YDKLGSGEGS DYQLPEMSNF AQKGDYNDES ACDGISKTSI ANGQYGASSS GSHDDLYPYD  360
AVPVDGTAGK TFGKHLVNLL DSIPTKTALA EENPPATRKS VLNAVSPSSI RVTAGIIQLG  420
GLNFTASEHG PLQKNGDFSL LLSFAMDGDV ASKSVSFEPA TRVGAVPMVM RSGLYLFFVS  480
AMILMLSYKV GLCIYSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-421315311140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677410.11e-176NAC domain-containing protein 78 isoform X1
TrEMBLA0A0E0NN051e-165A0A0E0NN05_ORYRU; Uncharacterized protein
STRINGBRADI3G56080.11e-118(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7351822