PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02252.1.g00130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 250aa    MW: 27678.1 Da    PI: 10.1574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02252.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-1991141256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ +l+ge
  Zmw_sc02252.1.g00130.1.sm.mk  91 LYRGVRQRR-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAHRLRGE 141
                                   59****998.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.85E-2890148No hitNo description
SMARTSM003801.4E-3191154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2991148IPR001471AP2/ERF domain
PROSITE profilePS5103222.68291148IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2291148IPR016177DNA-binding domain
PfamPF008471.1E-1392141IPR001471AP2/ERF domain
PRINTSPR003671.8E-992103IPR001471AP2/ERF domain
PRINTSPR003671.8E-9114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDASLRTLPP ASRFPGEVRS AFSSLLLAPG ASALDTVFSH LPAPVTVPPL GSGVYHRQCE  60
LPRHFAASQP SSSSSSSSVA TFQAPASRQK LYRGVRQRRW GKWVAEIRLP QNRVRVWLGT  120
YDSPETAAHA YDRAAHRLRG EYARLNFPGV MDGRGDCPDD LQPLRAAVDA KIQAIRARAR  180
RRREEQRRQR FEGASQAAPT TTKVARPELS EDATTTTTTS TTPYGSLDGE LPLEHMPSFD  240
PELIWEVLNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1887148163ATERF1
3gcc_A8e-1887148163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18798RQKLYRGVRQRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638431.11e-97ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-36ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0M4L9618e-98A0A0M4L961_9POAL; DREB2A
STRINGORGLA03G0412600.12e-98(Oryza glaberrima)
STRINGORGLA05G0229700.12e-98(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]