PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02216.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 202aa    MW: 22607.2 Da    PI: 9.4373
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02216.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.59.1e-1159101446
                                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                                      k+ rr+++NReAAr+sR+RKka++++Le    +L +  ++L+
  Zmw_sc02216.1.g00050.1.sm.mkhc  59 QKVLRRLAQNREAARKSRLRKKAYVQQLESSKLKLASLEQELQ 101
                                     5899*************************96666666555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-855103No hitNo description
SMARTSM003382.0E-856119IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.28958102IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-760103No hitNo description
PfamPF001709.2E-860101IPR004827Basic-leucine zipper domain
PROSITE patternPS0003606378IPR004827Basic-leucine zipper domain
PfamPF141442.7E-21142200IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MADANSRTDT SIVLDTDDKD QRDANVRLGS LKLENGHSGA AMASNSSDRS DRSDKPMDQK  60
VLRRLAQNRE AARKSRLRKK AYVQQLESSK LKLASLEQEL QKARQQGIFI SSSGDQTHSM  120
SGNGAMTFDL EYARWQEEQN KQINELRAAV NAHASDSDLR LIVDGIMAHY DEIFRQKGVA  180
AKADVFHILS GMWKTPAERL TT
Functional Description ? help Back to Top
Source Description
UniProtPlays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199874.11e-118transcription factor TGA2.2 isoform X1
SwissprotQ7X9931e-110TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBLA0A446QUZ91e-117A0A446QUZ9_TRITD; Uncharacterized protein
TrEMBLA0A453I7D41e-117A0A453I7D4_AEGTS; Uncharacterized protein
TrEMBLW5EIP11e-117W5EIP1_WHEAT; Uncharacterized protein
STRINGTraes_4AS_6EDD5ACF7.21e-118(Triticum aestivum)
STRINGTraes_4DL_73DC40D7B.11e-118(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4226833
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  4. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  5. Chern M, et al.
    A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.
    PLoS Genet., 2016. 12(5): p. e1006049
    [PMID:27176732]