PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02201.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 586aa    MW: 62414.6 Da    PI: 9.4734
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02201.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.89.2e-39311407395
                           TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssss 81 
                                   ++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++as++  +++s+sss
  Zmw_sc02201.1.g00090.1.am.mk 311 VRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIVAATGTGTTPASFSttSPSSRSSS 391
                                   689************************************************************999998888888888888 PP

                           TCP  82 asnsssg..kaaksaa 95 
                                   +++++++  +aa++++
  Zmw_sc02201.1.g00090.1.am.mk 392 QQAPQIQlpSAAPAHH 407
                                   8888887553333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.50.1401.2E-3297203IPR012340Nucleic acid-binding, OB-fold
SuperFamilySSF502492.4E-2099202IPR012340Nucleic acid-binding, OB-fold
CDDcd044787.01E-21130202No hitNo description
PROSITE profilePS5136927.838316370IPR017887Transcription factor TCP subgroup
PfamPF036341.2E-32316395IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MFGALLSSAP AFSYFTTPLQ IPVPHFSPPI HHPVLDPSPD PPPEEEQAAA AAMMFSSQPD  60
NFSPSQINSS QNDSITPSKV PSISRLHSIL LRSPIPSTMP LTVKQIADAH QSGTGDKGAP  120
FIVDGVETAN VRLVGMVNGK AERTTDVSFT LDDGTGRLDF IRWVNDAADS TETAAIQNGM  180
YVSVIGSLKG LQERKRATAF AISEEEVGCI QRNASLLISR IHGFSSFTAR QQEKMPAQRT  240
GRTGSNGSRA GGRSDPIRSG MLPAARVSVS PPFPTRPHPV SQDRAPMTTR PADGGGGDKQ  300
LVPASNNAHG VRKAPSKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL  360
RQAEPSIVAA TGTGTTPASF STTSPSSRSS SQQAPQIQLP SAAPAHHVLP HAAAAAAPFI  420
LGKRVRGAND DTEVTAVGPA AGFWALPARA DFGQLWSFAA APDMMVAAVP EEASAARYLP  480
VAQAQGNLNL LASFSGGPAG NGATAARAEE ESAHEFFCRS LIVLYVSLAF THVNQERDWM  540
EPLLLAVLFP IPASKKRLRK NPHSFTPFYC THGAVNHVCN CTIRPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnx_B5e-1110019911108Putative uncharacterized protein
4gnx_Y5e-1110019911108Putative uncharacterized protein
4gop_B5e-1110019911108Putative uncharacterized protein
4gop_Y5e-1110019911108Putative uncharacterized protein
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
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