PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02135.1.g00230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 177aa    MW: 18791.4 Da    PI: 6.8033
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02135.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-16145755
                           AP2  7 rwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                  r+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Zmw_sc02135.1.g00230.1.am.mk  1 RQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 45
                                  6888.**********7.....337************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-28154IPR001471AP2/ERF domain
SMARTSM003801.2E-28159IPR001471AP2/ERF domain
PROSITE profilePS5103222.734153IPR001471AP2/ERF domain
PfamPF008472.5E-10145IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-19154IPR016177DNA-binding domain
CDDcd000181.18E-16155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
RQRPWGKWAA EIRDPHKAAR VWLGTFETAE AAARAYDEAA LRFRGSRAKL NFPEDARLPP  60
AGTVTSAATP TLASSTSAYP ASAVSEYLQH QTLLQGSGAH GGFPQYYGDG GAMRSSSGSY  120
SFPASSVTVA SVPSSASSAP GYGEEAQWSW QESAWNYPAT ATTDSWSGSS YYPPPSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-211531063ATERF1
3gcc_A1e-211531063ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649697.21e-48ethylene-responsive transcription factor ABR1
TrEMBLK7V4W92e-47K7V4W9_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGPavir.J02402.1.p5e-48(Panicum virgatum)
STRINGGRMZM2G100727_P014e-48(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649