PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02103.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 559aa    MW: 61766.7 Da    PI: 10.6722
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02103.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.5e-49221581128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgk 72 
                                   lppGfrF P+deelv++yL kkv++++     ++ evd++  ePw+Lp          ++k + +ewyfFs rd+kyatg+
  Zmw_sc02103.1.g00090.1.am.mk  22 LPPGFRFYPSDEELVCHYLYKKVANERAAQ-GTLVEVDLHAREPWELPGeplpvlvyhAAKLTASEWYFFSFRDRKYATGS 101
                                   79*************************776.78**************955899998764445778**************** PP

                           NAM  73 rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   r+nratk+gyWkatgkd+ev s  ++++vg++ktLvfy+grap+g+k+ Wvmhe+rl
  Zmw_sc02103.1.g00090.1.am.mk 102 RTNRATKTGYWKATGKDREVRSPaTRAVVGMRKTLVFYQGRAPNGVKSCWVMHEFRL 158
                                   **********************977788***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5419168IPR003441NAC domain
PROSITE profilePS5100555.06622208IPR003441NAC domain
PfamPF023654.0E-2723158IPR003441NAC domain
SuperFamilySSF1019413.79E-54196208IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MDRQADRGRQ RGMGLREIES TLPPGFRFYP SDEELVCHYL YKKVANERAA QGTLVEVDLH  60
AREPWELPGE PLPVLVYHAA KLTASEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRE  120
VRSPATRAVV GMRKTLVFYQ GRAPNGVKSC WVMHEFRLDS PHSPPKVTFR RQTDQLLDIL  180
PLHNTVSNSV GVTRYLQEDW VLCRVFQKRK DSEQEAAGSS RAVVPLDQPV LEALTDHQTA  240
GSPVGFAPPQ DNNALLSAAI WQCGSVLDHQ YPQEVSSSPM MTMTGLVGSR VVGDGCGFFY  300
DAGFEDTAVN IAGGGFPQGP ALDSFPAWDG PLQPSASQFP HDFRRLPVPV APTRPTGVRP  360
RYRKATARTR PQELGSLGAR PDRDGPWRQR GRGGTSSARA SVHSSTRKHH WTGRGPGRPE  420
PPPRQRDNPG GPSPSADTEY RDPRATVTRA GPRPRRIDRV KRAQRPVKAP RARPPGCLQV  480
LLPHSGLRAC CQRRPSPAVD GGHDRPRSRF PPAARGDSHR VVRALASSCL PTCPGASTGE  540
GNRARRVALM QSERCSSVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-41132147174NAC domain-containing protein 19
3swm_B2e-41132147174NAC domain-containing protein 19
3swm_C2e-41132147174NAC domain-containing protein 19
3swm_D2e-41132147174NAC domain-containing protein 19
3swp_A2e-41132147174NAC domain-containing protein 19
3swp_B2e-41132147174NAC domain-containing protein 19
3swp_C2e-41132147174NAC domain-containing protein 19
3swp_D2e-41132147174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824637.11e-130protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A2T7CXR41e-129A0A2T7CXR4_9POAL; Uncharacterized protein
STRINGPavir.Ga01251.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166