PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02043.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 243aa    MW: 26190.4 Da    PI: 4.5992
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02043.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-183283156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++y GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g+
  Zmw_sc02043.1.g00060.1.am.mk 32 TRYLGVRRRP-WGRYAAEIRDPVT---KERHWLGTFDTADEAAIAYDRAARNIRGA 83
                                  5799******.**********754...5*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.69E-273291No hitNo description
PROSITE profilePS5103221.0083390IPR001471AP2/ERF domain
PfamPF008471.4E-103382IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-283390IPR001471AP2/ERF domain
SMARTSM003802.2E-313396IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-203390IPR016177DNA-binding domain
PRINTSPR003673.0E-83445IPR001471AP2/ERF domain
PRINTSPR003673.0E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDFSYFFSSP SSDKKSSKRR QQQEEPDSGS ATRYLGVRRR PWGRYAAEIR DPVTKERHWL  60
GTFDTADEAA IAYDRAARNI RGASARTNFA YPDLPPGSSV TPYLSPDISA DQLQQYYANP  120
VPAAQPTPAS NQLAAHGGAG SEAYSSYHVP EAVSSYGADD VSMAYGGNAE MDMMYNGGAG  180
AGGRAWCDAT ELEFGGYSDE PGNASRGTYL KEGYVHSPLL SPMPAADEVD GFQLGGSSSS  240
YYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1733891471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11320KKSSKRRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821358.11e-107ethylene-responsive transcription factor LEP-like
TrEMBLA0A1E5VG731e-111A0A1E5VG73_9POAL; Ethylene-responsive transcription factor LEP
STRINGPavir.Ab01422.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397