PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02007.1.g00130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 428aa    MW: 46711.9 Da    PI: 5.3227
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02007.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA36.75.9e-12386418131
                          GATA   1 CsnCgttkTplWR..rgpdgnktLCnaCGlyyr 31 
                                   C++Cgt +Tp+WR   gp+g  tLC aCG+ y 
  Zmw_sc02007.1.g00130.1.am.mk 386 CRHCGTYETPQWRicTGPEGRFTLCDACGIQYS 418
                                   *************77799************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.8E-5111162No hitNo description
SMARTSM004010.0047113157IPR000679Zinc finger, GATA-type
SMARTSM004010.082225270IPR000679Zinc finger, GATA-type
SMARTSM004015.9E-5380428IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-9380422No hitNo description
PROSITE profilePS501149.183380417IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-9381419IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.95E-7385417No hitNo description
PfamPF003204.7E-9386417IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MVPGDLPDDE SPAALAEQLF GSGDDPMAFI DDTVRVVMVL QELEVVAATG KDGKEEEELK  60
GLSNKDVFPT LNTKALPEAP ATAPRTQRKG VRPSQGAASS LPPALRPGTR APAKAGRQCR  120
HCGTEGSYTL CNVCGIQYKR GALLPEYRPL NIPTFSPDLH SNHQQRVIDM ARSREEEKKE  180
SFLSDADLEA IINDPALQAL AASGMDEHRD WVLKNAFQPG TLAPTKAGQQ CRHCGTYETP  240
LWHICTGPEG RFALWGIQYC NVTLLPEYPP LKTPTSPALH SDWRQCVIDT ARFLEAEWSR  300
SGIGLEAFLR DMVWDMLAAS GHYSKEELES LSKAASTLDT MALPEAAATA QLPQTMGVRW  360
SREAASSPLP ALQPGNLAPA KAGQQCRHCG TYETPQWRIC TGPEGRFTLC DACGIQYSNV  420
TVLPEYRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK4AJE43e-31K4AJE4_SETIT; Uncharacterized protein
STRINGSi039011m9e-31(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2818535