PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01996.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 275aa    MW: 29390 Da    PI: 9.8206
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01996.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-1999149155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++++GVr ++ +gr++AeIrdp    k++r++lg+f++ae+Aa+a++aa++ l+g
  Zmw_sc01996.1.g00070.1.am.mk  99 TRFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTFDSAEDAARAYDAAARTLRG 149
                                   589*******.**********83...36*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-1399149IPR001471AP2/ERF domain
CDDcd000181.16E-1799157No hitNo description
PROSITE profilePS5103223.472100157IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-22100158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-31100157IPR001471AP2/ERF domain
SMARTSM003801.3E-36100163IPR001471AP2/ERF domain
PRINTSPR003674.9E-10101112IPR001471AP2/ERF domain
PRINTSPR003674.9E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDKIGGKEGA GGKRKRKRER RESRQGGWWT GGGGSVAGGW ECAVRGGSAN KQTFQLSPPH  60
HPRQLPDYPA PRTAGFIGGE GMRRGGPVAA AGPEGDLVTR FRGVRKRPWG RYAAEIRDPA  120
KKARVWLGTF DSAEDAARAY DAAARTLRGP KARTNFPLPV AAHHHHQRHA AYTAPYTAVA  180
ARPAISSMSS TVESFGGARS RPALPPRPPP PPIPDGDCRS DCGSSASVVD DDCADAATSP  240
SCRLPLCLDL NLPPGYCGFV CYGDEDELRL TELRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21101160666ATERF1
3gcc_A5e-21101160666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11220KRKRKRERR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951621.11e-56ethylene-responsive transcription factor 3-like
SwissprotO803391e-30ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A3L6RU451e-64A0A3L6RU45_PANMI; Ethylene-responsive transcription factor 3-like
STRINGPavir.Ab00660.1.p3e-60(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]