PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01990.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 211aa    MW: 23335 Da    PI: 10.7672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01990.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17111160255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +++G+r+++ +g+W+AeIrdp     + +r++lg+f tae Aa+a++   ++l+g
  Zmw_sc01990.1.g00110.1.am.mkhc 111 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAEYAARAYDVESRRLRG 160
                                     69*******.**********72....35*******************99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.2E-31110168IPR001471AP2/ERF domain
PROSITE profilePS5103222.919111168IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-21111169IPR016177DNA-binding domain
PfamPF008471.4E-10111157IPR001471AP2/ERF domain
CDDcd000182.45E-24111170No hitNo description
SMARTSM003802.0E-32111174IPR001471AP2/ERF domain
PRINTSPR003674.1E-11112123IPR001471AP2/ERF domain
PRINTSPR003674.1E-11134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MCGGAILTEL IPPPRRATSR PVTAGSLWPA SCKKGGSGRN KKRGRVDDAE TDDFEAAFEE  60
FDDDFDEMEE DEDDDYGYDG SRPFVFASKS AFPAAHDGRA ARSQKKRGRR HFRGIRQRPW  120
GKWAAEIRDP HKGTRVWLGT FNTAEYAARA YDVESRRLRG SKAKVNFPAA GARPRRAKTR  180
PAPKTQVPAA AQPASASRGG QKKQEGAARR T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21110168463ATERF1
3gcc_A3e-21110168463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109QKKRGRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791485.11e-80ethylene-responsive transcription factor 1-like
RefseqXP_025791486.11e-80ethylene-responsive transcription factor 1-like
SwissprotQ6K7E63e-35ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0A9VK368e-82A0A0A9VK36_ARUDO; Uncharacterized protein
STRINGPavir.Ib00526.1.p5e-80(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]