PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01923.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 514aa    MW: 56601.5 Da    PI: 9.9237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01923.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.43.5e-50952391128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................kvka.eekewyfFskr 64 
                                   +ppGfrFhPtdeel+ +yLkkkv+ ++++l +vi+e+d++k+ePwdL+                 ++ +  ++ewyfFs++
  Zmw_sc01923.1.g00040.1.am.mk  95 VPPGFRFHPTDEELLYYYLKKKVSFEPIDL-DVIREIDLNKLEPWDLKGagansqdlfmahadrcRIGTgPQEEWYFFSHK 174
                                   69****************************.9***************94588999999888887644443556******** PP

                           NAM  65 dkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   dkky+tg+r+nrat++g+Wkatg+dk+++    g+ +gl+ktLvfy+grap+g+kt+W+mheyrl
  Zmw_sc01923.1.g00040.1.am.mk 175 DKKYPTGTRTNRATAAGFWKATGRDKAIFLGnAGRRIGLRKTLVFYTGRAPHGKKTEWIMHEYRL 239
                                   *****************************9767888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-5492259IPR003441NAC domain
PROSITE profilePS5100556.5695259IPR003441NAC domain
PfamPF023656.8E-2796239IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MHAWRGIAGD LHAAAVNGHT HPPIFSGDRP AAPRALSRPA ARAAAGWSQQ GSDHLPAMHV  60
HAHLQVAGMA WWRCAGAGDA VMLDIWILDG SPLSVPPGFR FHPTDEELLY YYLKKKVSFE  120
PIDLDVIREI DLNKLEPWDL KGAGANSQDL FMAHADRCRI GTGPQEEWYF FSHKDKKYPT  180
GTRTNRATAA GFWKATGRDK AIFLGNAGRR IGLRKTLVFY TGRAPHGKKT EWIMHEYRLD  240
EDNVEVPEDG WVVCRVFKKN SIQRSFEQPG MKLGDEEELQ TLTPVDQKQG RLRNQLMHGG  300
FPAFDPFMHL PQLASPDATP GSGTSAFMSG TPALAMNPLE MGSSSQYMTK LTTVLAGANA  360
GDRIGAVADW SILDNLLASR QNLDQLFHGK LGGAAVEAPH HYQQQLPLLM ETGASSLPRL  420
PLHYLGCKAT DLLNLVAFVS RPRPAKFRHP GRGIESKGVE RVQARGAAAA AAAAAMVRRS  480
PFRRPPSLLT SNRASAVFSP PSPFQYKGRW PREH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-469126113167NO APICAL MERISTEM PROTEIN
1ut4_B3e-469126113167NO APICAL MERISTEM PROTEIN
1ut7_A3e-469126113167NO APICAL MERISTEM PROTEIN
1ut7_B3e-469126113167NO APICAL MERISTEM PROTEIN
3swm_A4e-469126116170NAC domain-containing protein 19
3swm_B4e-469126116170NAC domain-containing protein 19
3swm_C4e-469126116170NAC domain-containing protein 19
3swm_D4e-469126116170NAC domain-containing protein 19
3swp_A4e-469126116170NAC domain-containing protein 19
3swp_B4e-469126116170NAC domain-containing protein 19
3swp_C4e-469126116170NAC domain-containing protein 19
3swp_D4e-469126116170NAC domain-containing protein 19
4dul_A3e-469126113167NAC domain-containing protein 19
4dul_B3e-469126113167NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827212.11e-163NAC domain-containing protein 76-like
TrEMBLA0A1E5VY611e-165A0A1E5VY61_9POAL; NAC domain-containing protein 76 (Fragment)
STRINGPavir.Ab01037.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781