PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01899.1.g00100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 256aa    MW: 27863.6 Da    PI: 10.5579
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01899.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1318.7e-41171451128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                     lppGfrFhPtdeelvv+yL++k+ +++l++  vi+ v d+ +++PwdLp    a++ e yfFs r+ +++ g rk+ra 
  Zmw_sc01899.1.g00100.1.am.mkhc  17 LPPGFRFHPTDEELVVQYLRRKALSRPLPA-AVIPVVhDVARLDPWDLP---GARDGEAYFFSLRRARATDGGRKRRA- 90 
                                     79****************************.8899998***********...447789*******************7. PP

                             NAM  79 ksgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                      sgyWkatgk k+v+ +      k+ lvg+k+tL+f++g +++ ++t+Wvmheyrl
  Zmw_sc01899.1.g00100.1.am.mkhc  91 CSGYWKATGKAKPVFLQgsgcggKRYLVGVKTTLAFHRGASSS-SRTSWVMHEYRL 145
                                     67**************97777655556**********987776.8*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-4516179IPR003441NAC domain
PROSITE profilePS5100545.39717179IPR003441NAC domain
PfamPF023658.7E-2518145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEWPVAAARD GEAPRQLPPG FRFHPTDEEL VVQYLRRKAL SRPLPAAVIP VVHDVARLDP  60
WDLPGARDGE AYFFSLRRAR ATDGGRKRRA CSGYWKATGK AKPVFLQGSG CGGKRYLVGV  120
KTTLAFHRGA SSSSRTSWVM HEYRLAVPGR VAEQRKHAGQ GCAAHPEPGE WVVCRVFLKN  180
GPRRRPAGET PGNLAYAAPL RHQSTGRLPL LLSSSSLPQA SSSSCVTGVT ELSEQDEVDS  240
GNSVRDAPSA AFRREA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-3291817170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957303.11e-101NAC domain-containing protein 41
SwissprotO227982e-46NAC41_ARATH; NAC domain-containing protein 41
TrEMBLA0A0A9GST61e-101A0A0A9GST6_ARUDO; Uncharacterized protein
STRINGSi030942m1e-100(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]