PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01817.1.g00050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 249aa    MW: 27848.2 Da    PI: 11.0159
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01817.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA22.91.2e-071651792135
                          GATA  21 tLCnaCGlyyrkkgl 35 
                                   +LCnaCG++yrkk++
  Zmw_sc01817.1.g00050.1.am.mk 165 SLCNACGIRYRKKRR 179
                                   6***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.1E-4164180IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MISFSDDDGT CRSKSEFTHK QSFHRRSETP RRLFSLPSAK APLRPHLRQN PFFRSSLSLS  60
LPHLPRSYSL RSLYYTLRVT EKPAGGRTKK RSSGRRSRAA DRSSGATAAD GVRRSQDRWD  120
RGAGGREEEL RGMPRHHDAH VAERADGTQG EFTIGLPGLL LDRASLCNAC GIRYRKKRRQ  180
DLGLDQKQVQ QQHQGEIKTE VKESNSNSSS GSSNNLEVVQ ERKLLMGVEE AAFLLMTLSS  240
SSTSTLLHG
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854