PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01783.1.g00180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 114aa    MW: 12432.1 Da    PI: 11.1724
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01783.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-1759108255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  Zmw_sc01783.1.g00180.1.am.mk  59 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 108
                                   6******99.**********732...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-2758114IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1959114IPR016177DNA-binding domain
PROSITE profilePS5103221.54959114IPR001471AP2/ERF domain
SMARTSM003802.5E-2859114IPR001471AP2/ERF domain
PfamPF008476.0E-1159108IPR001471AP2/ERF domain
PRINTSPR003675.5E-96071IPR001471AP2/ERF domain
CDDcd000184.47E-2162114No hitNo description
PRINTSPR003675.5E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MQGEYRSSSE ESAAAAAAAA AAAAMAPLAA AAAAAVKMEE QAAMAPSAQQ HQQQQPRRQY  60
RGVRMRKWGK WVAEIREPHK RTRIWLGSYA TPVAAARAYD TAVFYLRGRS ARLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1358114461ATERF1
3gcc_A2e-1358114461ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977035.11e-44ethylene-responsive transcription factor RAP2-10-like
SwissprotQ8W3M31e-30RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
SwissprotQ9SW631e-30RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A368RZW13e-43A0A368RZW1_SETIT; Uncharacterized protein
STRINGPavir.J27349.1.p1e-40(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]