PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01696.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 176aa    MW: 19911.1 Da    PI: 8.5677
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01696.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1028.1e-32201361129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lp Gf Fh +dee++++yL +kv ++++++  +i+e+        ++      +ekewyf++++ +ky++g r nrat++g
  Zmw_sc01696.1.g00010.1.sm.mk  20 LPLGFGFHLSDEEIITFYLMPKVLDSNFTA-IAIAEA--------KM------GEKEWYFYCQKVHKYQKGVRINRATNAG 85 
                                   699************************888.556663........33......789************************* PP

                           NAM  82 yWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrle 129
                                   +Wkatgkdk++++ ++     v +kktLvfy+g++p +ekt+W+mheyrle
  Zmw_sc01696.1.g00010.1.sm.mk  86 FWKATGKDKAIYQVSSMMpviVRMKKTLVFYTGKSPWSEKTEWIMHEYRLE 136
                                   ************985444566****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-3917141IPR003441NAC domain
PROSITE profilePS5100527.35620162IPR003441NAC domain
PfamPF023652.0E-2121135IPR003441NAC domain
PfamPF063388.4E-592133IPR010461Competence protein ComK
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030420Biological Processestablishment of competence for transformation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEDHKYEGIR GTVDDAGLNL PLGFGFHLSD EEIITFYLMP KVLDSNFTAI AIAEAKMGEK  60
EWYFYCQKVH KYQKGVRINR ATNAGFWKAT GKDKAIYQVS SMMPVIVRMK KTLVFYTGKS  120
PWSEKTEWIM HEYRLEGSDK LCCPSTSSNI SKAMTLCCGR DMQALAKCTV HGPVAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-2881352140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679478.18e-53protein CUP-SHAPED COTYLEDON 1
RefseqXP_025801540.15e-53NAC domain-containing protein 79-like
SwissprotQ9LJW37e-45NAC59_ARATH; NAC domain-containing protein 59
TrEMBLA0A1E5V4C42e-53A0A1E5V4C4_9POAL; NAC domain-containing protein 79
STRINGSi030284m7e-52(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3513624
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]