PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01683.1.g00130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 156aa    MW: 17451.4 Da    PI: 9.9227
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01683.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.92.5e-094521361
                                    HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1 13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61
                                    NR +A rs +RK +++ eLe+kv++L++e ++L  +l  l+     l +
  Zmw_sc01683.1.g00130.1.sm.mkhc  4 NRQSAARSKERKIKYTSELERKVQTLQTEATTLSAQLTLLQRDTTGLSA 52
                                    ************************************9999877666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147039.40E-18146No hitNo description
PROSITE profilePS502179.438157IPR004827Basic-leucine zipper domain
SMARTSM003385.6E-6256IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-10248No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-10450No hitNo description
PfamPF001709.5E-8444IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
ILANRQSAAR SKERKIKYTS ELERKVQTLQ TEATTLSAQL TLLQRDTTGL SAENRELKLR  60
LQSMEEQAKL RDALNEALRE EVQRLKIAAG QAANMNGNPF NGGLQQQIPS YFSQQQQMSY  120
QGGHQSQHRN PSHHQGPSNG GQSLGGQFLN DSMDFI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441871.12e-88transcription factor VIP1
SwissprotQ6S4P41e-44RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A0D3HRQ76e-88A0A0D3HRQ7_9ORYZ; Uncharacterized protein
TrEMBLC5YS974e-87C5YS97_SORBI; Uncharacterized protein
STRINGSb08g003940.17e-88(Sorghum bicolor)
STRINGOBART12G03760.11e-88(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19253892
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]