PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01679.1.g00200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 225aa    MW: 24788.7 Da    PI: 5.7383
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01679.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1003.3e-31301491128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                     lppGf+F P+deelvv++L++k++ ++++ + v++ev  ++ +Pw+L+ k+ +  ++wyfFs++         ++r+t 
  Zmw_sc01679.1.g00200.1.am.mkhc  30 LPPGFHFFPSDEELVVHFLRRKASLHPCQPDVVVPEVLPNQQDPWELDGKALQAGNQWYFFSHAT--------QSRVTP 100
                                     79*************************999778**************966667789******975........5799** PP

                             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkge.ktdWvmheyrl 128
                                     +gyW+    d+ v s +g +vg+k+tLvf  gr   g+ +t+Wvmhey+l
  Zmw_sc01679.1.g00200.1.am.mkhc 101 NGYWNPVCDDEMVSS-GGGNVGIKRTLVFSLGRPCGGThETNWVMHEYHL 149
                                     *********999999.9999**********9999887648********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-4123187IPR003441NAC domain
PROSITE profilePS5100538.17730189IPR003441NAC domain
PfamPF023654.6E-2231149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSDSRLPPAS SPSTSSSFAP HLAMVGPSDL PPGFHFFPSD EELVVHFLRR KASLHPCQPD  60
VVVPEVLPNQ QDPWELDGKA LQAGNQWYFF SHATQSRVTP NGYWNPVCDD EMVSSGGGNV  120
GIKRTLVFSL GRPCGGTHET NWVMHEYHLL DGSCKGSGGT SSSSKRLHKK KSHSKIECNN  180
WVICRVFDSS CGSQVSFQDE GMELSCLDEV FLSLDDYDEV SLPNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-313019420173NAC domain-containing protein 19
3swm_B2e-313019420173NAC domain-containing protein 19
3swm_C2e-313019420173NAC domain-containing protein 19
3swm_D2e-313019420173NAC domain-containing protein 19
3swp_A2e-313019420173NAC domain-containing protein 19
3swp_B2e-313019420173NAC domain-containing protein 19
3swp_C2e-313019420173NAC domain-containing protein 19
3swp_D2e-313019420173NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168172KKKSH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823281.11e-103NAC domain-containing protein 104-like isoform X1
SwissprotQ8GWK62e-56NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A3L6PXI41e-102A0A3L6PXI4_PANMI; NAC transcription factor 29-like
STRINGPavir.J14631.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]