PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01566.1.g00230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 818aa    MW: 86768.8 Da    PI: 10.8278
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01566.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP70.72.7e-22395457176
                                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                                     +CqvegC +dls ak y+ rhkvC +h+k+pvv+v+g+eqrfCqqCs             sCrrrLa+hnerrr++
  Zmw_sc01566.1.g00230.1.am.mkhc 395 RCQVEGCGVDLSGAKPYYCRHKVCCIHAKTPVVVVAGIEQRFCQQCS-------------SCRRRLAGHNERRRRP 457
                                     6*********************************************9.............9*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-20391442IPR004333Transcription factor, SBP-box
PROSITE profilePS5114122.769393457IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-28394460IPR004333Transcription factor, SBP-box
PfamPF031101.7E-15396456IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MATVNRRARP AVKLRQETAP HSRSCERWQL ATASELSLDV TPANSHARTS APVIQLACAF  60
SRHTDGFERR LRYWFLDQAS RGGRCGRSNG AKEGPYRQPR CGKPTQGHRR CRGAVRAQWP  120
LPPLFTSLAR AVARPPVAGR LAFLSLSPVR VTVDYTGASP VRAHEGIAVA TVRRVKTARE  180
VHKARLPTKP QCPRNTIAKE RVGAASGSSR GARKESLLVV VEASSVGVRV RRGRKETAAN  240
HWRTRAHTAP HTRSVILRAA PPLLSPLLAS LSPSYAALNS LFHSLLSPAK RGQRGRAGKI  300
ATTLPQQGSE AQQLAAMDTG GSGGGGGDDV HGLKFGKKIY FEQDSTAGGS REAAGGGRKG  360
KSAAAGSSGG PASTAPTAAG AVAAATPPRA ATPPRCQVEG CGVDLSGAKP YYCRHKVCCI  420
HAKTPVVVVA GIEQRFCQQC SSCRRRLAGH NERRRRPPPG PLNSRFGRLA SSFQEPGRFR  480
SFLLDFSYPR VSSGAMDAWP GVQPGDRMSS AIQWQGNHDQ LRPRSGAVAG YGDHAYIGPG  540
GSVAGTSSMH PAFELPHGGC VAGVATDSCC ALSLLSTQPW DSTQSGSHHH RSPAMSTASA  600
FEGSNPVPVS PSVMASSYAA ASTWSGSRVH ESARNLHHHH PLSQEGDLHM VHPGSVHHGH  660
FSGELELALQ GSGEPSNPPQ VDHGSSGAFG HSSNAVNCAP PPPLHLPHRC FPSPETRPGA  720
SPSPPLARFV QLPSAAVSEP LLGIPSSPVF ASSLRPVDEK TLTRPSGKLR QRHCGHVEGG  780
AERGEERAIT NELEKDDGLE NCVPSVRYAI WWLIRGIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-173964561184squamosa promoter binding protein-like 4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787