PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01532.1.g00070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 203aa    MW: 20944.9 Da    PI: 8.2092
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01532.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.61.1e-292103197
                          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                     +C++C+vlr++C+++Cvl+p++     +++q +++ +v+k+FG++ +l++++a+pe++r+++++sl+yeA  r+ +Pv+
  Zmw_sc01532.1.g00070.1.sm.mkhc   2 SCNGCRVLRKGCSEGCVLRPCLqwidtAEAQGHATVFVAKFFGRAGLLSFITAVPEDQRPALFQSLLYEAAGRTINPVN 80 
                                     6*********************9999777889*********************************************** PP

                          DUF260  75 Gavgvilklqqqleqlkaelall 97 
                                     Gavg++ +++++l+q+++e++l+
  Zmw_sc01532.1.g00070.1.sm.mkhc  81 GAVGLLGTGNWHLCQAAVETVLR 103
                                     *****************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.4381107IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-252101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQWIDTAE AQGHATVFVA KFFGRAGLLS FITAVPEDQR  60
PALFQSLLYE AAGRTINPVN GAVGLLGTGN WHLCQAAVET VLRGGTIGPL PELGGTGDLY  120
GPAKRTGGWS TFSTAKRVRK GAEAPAATSC DLGLCLSPGS PPAAGERRAL LRPGTPSMSS  180
DESVTTTGGG GGEKDPVLLN LFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650230.11e-122PREDICTED: LOB domain-containing protein 37
SwissprotQ9FN116e-69LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A0A9DMH31e-120A0A0A9DMH3_ARUDO; Uncharacterized protein
STRINGOPUNC03G21330.11e-118(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]