PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01506.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 283aa    MW: 29766.6 Da    PI: 8.8317
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01506.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.21.5e-3024127189
                           TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssss 69 
                                   aag+kdrhsk+ T++g+RdRRvRls+++a+rf+d+qd+LG+d++sk++ WL+ +a + i++l+++            +   
  Zmw_sc01506.1.g00040.1.am.mk  24 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIRFYDVQDRLGVDQPSKAVAWLIGAAAAVIDALPSLdrssfalppavaD--- 101
                                   6899*************************************************************5555533332221... PP

                           TCP  70 asec.eaesssssasnsssg.........k 89 
                                      + +a++++s+++  s+g         +
  Zmw_sc01506.1.g00040.1.am.mk 102 ---AdDAGAEVSASE-TSKGsvlslvnapA 127
                                   ...122222222222.22223444433330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2926136IPR005333Transcription factor, TCP
PROSITE profilePS5136929.4252785IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MERVVAAGME RAACKRPRAD LDAAAGGKDR HSKVVTARGL RDRRVRLSVP TAIRFYDVQD  60
RLGVDQPSKA VAWLIGAAAA VIDALPSLDR SSFALPPAVA DADDAGAEVS ASETSKGSVL  120
SLVNAPAEIA VPAAAHQTNH AVHAYSGNAG GGGAFAQPLH CAATDDDKSM RQKGPPTLAY  180
YAAQTPSPYI TPARDLGTMP QLAFLHEEQQ QQPAVVFGRG TLQSNAVAAP LWPPAQQHPC  240
LLQRFTSADA AGLPFFLGGG AAPVTSSADR RVQFWNFKQE RKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-203286155Putative transcription factor PCF6
5zkt_B7e-203286155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963209.11e-102transcription factor PCF8
SwissprotA2ZMR91e-68PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A3L6T2891e-103A0A3L6T289_PANMI; Transcription factor PCF8
STRINGPavir.Ca02949.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638