PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01460.1.g00190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 422aa    MW: 46726.6 Da    PI: 5.8957
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01460.1.g00190.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.51.1e-1043102255
                             AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                      y+GV++++++gr++A+++d  ++n      k+ k  + g +  +e Aa+a++ a++k++g
  Zmw_sc01460.1.g00190.1.sm.mkhc  43 AYRGVTRHRWTGRFEAHLWDrDTWNRepqakKKkKGKQ-GAYEDEEAAARAHDLAALKYWG 102
                                     69******************877788899864446666.777777**************98 PP

2AP234.36e-11174217955
                             AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     ++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Zmw_sc01460.1.g00190.1.sm.mkhc 174 HHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 217
                                     7789******988422...5**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-1342111IPR016177DNA-binding domain
PfamPF008471.3E-843102IPR001471AP2/ERF domain
SMARTSM003806.0E-1743116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-1243110IPR001471AP2/ERF domain
PROSITE profilePS5103218.17643110IPR001471AP2/ERF domain
CDDcd000181.24E-19145227No hitNo description
PROSITE profilePS5103215.501146225IPR001471AP2/ERF domain
PfamPF008477.0E-6173216IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-14174227IPR016177DNA-binding domain
SMARTSM003809.2E-20174231IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-14174225IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MARPRTNDEE SSTAGAVRAK PKPKRARKGA LLPECRPSQR SSAYRGVTRH RWTGRFEAHL  60
WDRDTWNREP QAKKKKKGKQ GAYEDEEAAA RAHDLAALKY WGPGTVLNFP LCSYDDELKE  120
MEGQSREEYV GSVRRKSSGF SRGVSKYRGV ARFSSCKLAL SIGSPAELTN NLQHHHNGRW  180
EARIGRVLGN KYLYLGTYAT QEEAAVAYDI AAIEHRGLNA VTNFDISHYV NWHRRRGRRG  240
LGEQDGLDAT DLPNDLTEHA RATADLDETE VAVAAAFIEA DHLQHQDHIA DSYTEQVPDD  300
QEMMLDQLLL LHSPRFEEIM EQVSAAASAT MTESNASSSP SPSACTSSSA PSSLSQPSPK  360
RQPEPSSSAA ARCGFPDDVQ TYFECDDDGI GFAFAEVDTF LFGDLGAYAA PMFQCDLDVF  420
VS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.11e-135PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLK3YHX31e-137K3YHX3_SETIT; Uncharacterized protein
STRINGSi013842m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678