PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01453.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 369aa    MW: 39015.5 Da    PI: 4.9949
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01453.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35111022102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y ++ed++++++isw+++g++fvv+ + efa+++Lpk+Fkhsnf+SFvRQLn+YgFkkv  ++         weF+
  Zmw_sc01453.1.g00020.1.sm.mk  11 FLTKTYAMVEDPSTDDTISWNDTGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADR---------WEFA 82 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F++g+k+ll  i+r+k 
  Zmw_sc01453.1.g00020.1.sm.mk  83 NDCFRRGEKHLLGGIQRRKG 102
                                   *****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-387100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-567100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-348100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-3111100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-191134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-194961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1703.4E-4151179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MASPVAGTPP FLTKTYAMVE DPSTDDTISW NDTGTAFVVW RPAEFARDLL PKHFKHSNFS  60
SFVRQLNTYG FKKVVADRWE FANDCFRRGE KHLLGGIQRR KGTGASAGAA AVPGIPTAIP  120
ISSPPTSSGG EPAVSSSPPR GVAAAAGVSG AVAELEEENA RLRRENASLK RELARARSLC  180
DGVRRLVSRY DHGGEGEDDA EGGGDRGGGG ADXXXXAELE EENARLRREN ASLKRELARA  240
RSLCDGVRRL VSRYDHGGEG EDDAEGGGDR GGGGGGPGGK PILFGVAIGS KRSRGDDGDE  300
EDDGVDGVED DGEDEEEDDD ERHAARGRED KKRRNDQSDL DVLALSVRAA AAAARPGAAG  360
SRSRKSSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-26110011120Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446950.11e-119hypothetical protein SORBIDRAFT_06g025710
SwissprotQ7XRX31e-118HFB2A_ORYSJ; Heat stress transcription factor B-2a
TrEMBLC5YE301e-119C5YE30_SORBI; Putative uncharacterized protein Sb06g025710
STRINGSb06g025710.11e-119(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394