PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01397.1.g00080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 237aa    MW: 25446.3 Da    PI: 11.5471
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01397.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA23.48.4e-08161180120
                          GATA   1 CsnCgttkTplWRrgpdgnk 20 
                                   C+ C++t Tp+WR gp g++
  Zmw_sc01397.1.g00080.1.am.mk 161 CVECRATATPMWRGGPTGPR 180
                                   ******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.0E-5160178IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.46161219IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MQIRHSLGIR TGPKKLPGAA KGRAPLSNLR GAHIQRPIHP SVSVVSISKL YSTLLLAELP  60
ATLGWTLLAL LPTPPLSPKQ SNITITWTRP AGPDQNSHGL LYSTRYSSGP PSPAFPDQVY  120
FPPSRTTLTR LGGSLCRACL LQAIGIGVAA AAAPEERRPF CVECRATATP MWRGGPTGPR  180
VSKLSVFRFS PHPVDRFLFP LPSSGGDDES SPRSIMVQRG RSSRSIFADT SRKSSCS