PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01384.1.g00130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TCP
Protein Properties Length: 538aa    MW: 55746.9 Da    PI: 6.8031
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01384.1.g00130.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.93.7e-34184278282
                           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............sss 68 
                                   +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+ l  +               + 
  Zmw_sc01384.1.g00130.1.sm.mk 184 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKEAIDRLEVLpawqptatatnaaaAAA 264
                                   79**************************************************************66554443333222111 PP

                           TCP  69 saseceaesssssa 82 
                                   ++s++ ++s ++s+
  Zmw_sc01384.1.g00130.1.sm.mk 265 PSSSTHPDSAENSD 278
                                   11111111111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-31184281IPR005333Transcription factor, TCP
PROSITE profilePS5136933.211186244IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MRIAKVAAAA VAAANQAGDL DPRHQHRVAH GGDGAGGGGG EADEQQQQQH QRLLQLHQEG  60
QDQEPPSVPV FQLQHMQAAA LRQPASSAEY ALLAPMGDAG QSHHHHHGFQ PQLLSFGGVG  120
QHHQLHQFTA QAPAAGSASH SRSRAAAAGG GGGGGEIVPA SQSRVRSGGG EIVAVQGGHI  180
VRSTGRKDRH SKVCTARGPR DRRVRLSAHT AIQFYDVQDR LGYDRPSKAV DWLIKNAKEA  240
IDRLEVLPAW QPTATATNAA AAAAPSSSTH PDSAENSDDQ AQAITVAHTG FDFPSGAAGA  300
SGGGGTGFLP SSLDSDSIAD TIKSFFPMGG TGGGEASSST AGAQSSAMSF QSYTPDLLSR  360
TGGHSQELRL SLQSLPDPPM FQHQHPQPEH DRSHGHGSSQ QALFPGAGSY SFGGGAMWGA  420
EPAQSQRLVP WNVPDPGGGY LFNVSQQAAH MQAALGGQSQ FLFQRGPLQS SNQPSDRGWP  480
ETVEADNPMS AIGFAPGVGF SGFRIPARMQ GEEEHNGGGG GSGEKPPPPP SVSSASHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-20191244154Putative transcription factor PCF6
5zkt_B3e-20191244154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310872.10.0transcription factor PCF5
RefseqXP_021310873.10.0transcription factor PCF5
SwissprotA2WM140.0PCF5_ORYSI; Transcription factor PCF5
TrEMBLA0A3L6R0N00.0A0A3L6R0N0_PANMI; Uncharacterized protein
STRINGAC205574.3_FGP0060.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355