PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01341.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 356aa    MW: 39059.4 Da    PI: 6.7414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01341.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-52321591128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeelv++yL++kv +  +     i+evdi+++ePw+Lp +++ +e+ewyfFs rd+ky+tg r+nrat +g
  Zmw_sc01341.1.g00040.1.sm.mk  32 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-VDIAEVDINRCEPWELPGAARMGEREWYFFSLRDRKYPTGLRTNRATGAG 111
                                   79************************9777.34***************8888899************************** PP

                           NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatgkd+ev+++ +g+l+g+kktLvfykgrap+gekt+Wv+heyrl
  Zmw_sc01341.1.g00040.1.sm.mk 112 YWKATGKDREVICTtTGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 159
                                   ***********99878899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6121200IPR003441NAC domain
PROSITE profilePS5100557.56832200IPR003441NAC domain
PfamPF023653.2E-2733159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAMMMHQPQA MGDALWDILE EEMAAAAGEH GLPPGFRFHP TDEELVTFYL AAKVFNGACC  60
GVDIAEVDIN RCEPWELPGA ARMGEREWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR  120
EVICTTTGAL IGMKKTLVFY KGRAPRGEKT KWVLHEYRLD GDFAAGRRFW KVTDLSAVRL  180
YFLSSRCAQE EWVICRIFHK AVDQYSKMVM SMSPYYHPTD PSSFCFQQEP PHAALPLPNP  240
GICSGLAHAL PFHHSLENHH QGKSNVDTNG LPAASSLDQP NGSGGVNTCD SSAMPMLPAF  300
PSFASVVVTG KAAPHQQEAG VNAGPPEPPP PTLLDGYIAH SGFLYEMSPP AAPRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-483220020168NAC domain-containing protein 19
3swm_B9e-483220020168NAC domain-containing protein 19
3swm_C9e-483220020168NAC domain-containing protein 19
3swm_D9e-483220020168NAC domain-containing protein 19
3swp_A9e-483220020168NAC domain-containing protein 19
3swp_B9e-483220020168NAC domain-containing protein 19
3swp_C9e-483220020168NAC domain-containing protein 19
3swp_D9e-483220020168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663651.11e-147protein CUP-SHAPED COTYLEDON 1 isoform X2
SwissprotQ9S8515e-82NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLC0HG141e-147C0HG14_MAIZE; Protein CUP-SHAPED COTYLEDON 3
STRINGGRMZM2G430522_P011e-146(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]