PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01338.1.g00200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 320aa    MW: 34876.1 Da    PI: 8.8931
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01338.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.63.1e-33702111128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 
                                   lp+G++F+Ptd+el+ e+L+ k++ +        ++++  +i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+
  Zmw_sc01338.1.g00200.1.am.mk  70 LPAGVKFDPTDQELI-EHLEGKARPDArgqlhplVDEFIpTIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGT 148
                                   799************.99***99887767775542222223665557**********.555555677************** PP

                           NAM  73 rknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   rk+r+++      + +W++tgk+++v+s +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zmw_sc01338.1.g00200.1.am.mk 149 RKRRKVHtdeeggETRWHKTGKTRPVFS-NGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 211
                                   ****744456555778************.999***********6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3862230IPR003441NAC domain
PROSITE profilePS5100533.35270230IPR003441NAC domain
PfamPF023652.3E-1571211IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AGVAAAAARK QQQQTSSPRV NLIRTCPSCG HRAQYEQVQA  60
AATIQDLPGL PAGVKFDPTD QELIEHLEGK ARPDARGQLH PLVDEFIPTI EGENGICYTH  120
PERLPGVGKD GLIRHFFHRP SKAYTTGTRK RRKVHTDEEG GETRWHKTGK TRPVFSNGKL  180
KGYKKILVLY TNYGKQRKPE KTNWVMHQYH LGSDEEEKDG ELVVSKVFYQ TQPRQCGGGS  240
MSTAAKDAVP LAAPGAAGAT DQHQHDGNSS MLIKEASIVD FYSPAALIGY NQAAPNNRAA  300
ASAHLPNFEV HTAGAAGFGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969491.10.0NAC domain-containing protein 73
SwissprotO494591e-121NAC73_ARATH; NAC domain-containing protein 73
TrEMBLK3XK780.0K3XK78_SETIT; Uncharacterized protein
STRINGSi002301m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]