PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01326.1.g00190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 286aa    MW: 31525.2 Da    PI: 9.6864
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01326.1.g00190.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-19133182255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta eAa a+++a+++++g
  Zmw_sc01326.1.g00190.1.am.mk 133 AYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTALEAAHAYDEAARAMYG 182
                                   59****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-13132182IPR001471AP2/ERF domain
SMARTSM003801.3E-34133196IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-21133191IPR016177DNA-binding domain
PROSITE profilePS5103221.997133190IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-31134192IPR001471AP2/ERF domain
PRINTSPR003675.0E-9134145IPR001471AP2/ERF domain
CDDcd000186.65E-28134192No hitNo description
PRINTSPR003675.0E-9156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
LRAGACPSRR GFVWRWIGWT KFDPPFSACV ETIFCSAVVV LLLSPKWEFF DVAVRELGVF  60
LAVHSDCLLA GTRLKKRVRR KSTGPDSIAE TIKRWKEHNE KLQEEYGTRK APAKGSKKGC  120
MAGKGGPENR ACAYRGVRQR TWGKWVAEIR EPNRGKRLWL GSFPTALEAA HAYDEAARAM  180
YGPRARVNFS ESSADATSGC MSALSLLASN VPPADQRSDD KDEVESVETE VHALKVEVND  240
DLGSIHMEPA ALQISAIALQ ISAAVKSLNK RFPLLPFALA QLPTSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-14134189662ATERF1
3gcc_A2e-14134189662ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278RLKKRVR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968294.14e-99dehydration-responsive element-binding protein 2A isoform X1
SwissprotA2WL197e-82DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLC8CTX01e-124C8CTX0_9POAL; DREB-like protein 1
STRINGSi002067m1e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551