PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01311.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 535aa    MW: 56050.6 Da    PI: 10.8252
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01311.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer28.63.3e-09235254423
                   ZF-HD_dimer   4 vrYkeClkNhAaslGghavD 23 
                                    +Y+eC++NhAaslGgha+D
  Zmw_sc01311.1.g00090.1.am.mk 235 PKYRECRRNHAASLGGHAYD 254
                                   58*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.0E-6236254IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.94E-16320390IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27324391IPR009057Homeodomain-like
TIGRFAMsTIGR015653.9E-22332388IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
LPDGLPAAAT NSSRLRPARR AVPCRDKCHL PASTEHPSPR GGGCLAIASG FRCAISHRTD  60
PFVVIARIVV VPARRRRGRA AASGSMLVRS TLAGYLRPSV LHFWHLTPRR QQETCVTYFD  120
FSAAAAPLDP RSDGRRVDMH AGAVLVTLAA AAAARFHSYL LAVASPPPYL LFSPSGLDPS  180
SHANSPWLGA GGNLTLRGAM DAMDVKQYKA VVFPNGGVAK KVKPAAVAPA VVGEPKYREC  240
RRNHAASLGG HAYDEERSVS PPPSTQLHHV PVPVAQQPPP PPPSYPSAAP HMLLSLSSGA  300
PGTAMAAAAR LPAHQLTSPS SAPTPGGGAA PRKRFRTRFT AEQKQRMQEL SERLGWRLQK  360
RDEAIVDEWC RDIGVGKGVF KVWMHNNKHN FLGGHSARRS ASASAGAPTA AAAAALHNHT  420
PTAAGSAPPF HPSAPSPPPP PVLTSSSPGA TGFININGAA SSAPASYQEK INGSSSPQSA  480
RVADAVEPST GGTVRDGMGY EEEGAAFCRA GGAPNEIWAP LTLKRPARSA MAWPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A8e-203323901775ZF-HD homeobox family protein
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G161315_P011e-62(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374