PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01192.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 332aa    MW: 36986.2 Da    PI: 5.2473
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01192.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.5e-49301593128
                             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratks 80 
                                     pGfrFhPtdeelv++yL++kv gk+l++ e+ike+diyk++PwdLp +++ + +kewyfF+ r +ky+++ r+nr+t s
  Zmw_sc01192.1.g00040.1.sm.mkhc  30 PGFRFHPTDEELVTFYLRRKVVGKRLSI-EIIKEFDIYKHDPWDLPkASTISMDKEWYFFCLRGRKYRNSIRPNRVTGS 107
                                     9***************************.89***************445555789************************ PP

                             NAM  81 gyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     g+Wkatg d++++s+     g  +glkk+Lvfy+g+  kg+kt+W+mhe+rl
  Zmw_sc01192.1.g00040.1.sm.mkhc 108 GFWKATGIDRPIHSAaagrAGDCIGLKKSLVFYRGSCGKGTKTEWMMHEFRL 159
                                     **************977666666***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.78728186IPR003441NAC domain
SuperFamilySSF1019414.84E-5329186IPR003441NAC domain
PfamPF023654.0E-2530159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MKSSGHGDQV DEEVVLVGNE DEGEDLVDLP GFRFHPTDEE LVTFYLRRKV VGKRLSIEII  60
KEFDIYKHDP WDLPKASTIS MDKEWYFFCL RGRKYRNSIR PNRVTGSGFW KATGIDRPIH  120
SAAAGRAGDC IGLKKSLVFY RGSCGKGTKT EWMMHEFRLP PRAESTGSSP STHEAEVWTI  180
CRIFRRSLTY KKQPQAQSTV ASLAGAAPQP DSSSNTGSLD SADTGDEYMT GLLPQVPSDN  240
NASRVDYNSY QQFQGQWSNG LAQQQLPVSS AADTQPSPGM AASAFYHGVH GSLVDAPAGE  300
EYYKDEYCSW DDIGRMVMEL TDPSQFYDCT LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-483019719170NO APICAL MERISTEM PROTEIN
1ut4_B5e-483019719170NO APICAL MERISTEM PROTEIN
1ut7_A5e-483019719170NO APICAL MERISTEM PROTEIN
1ut7_B5e-483019719170NO APICAL MERISTEM PROTEIN
3swm_A6e-483019722173NAC domain-containing protein 19
3swm_B6e-483019722173NAC domain-containing protein 19
3swm_C6e-483019722173NAC domain-containing protein 19
3swm_D6e-483019722173NAC domain-containing protein 19
3swp_A6e-483019722173NAC domain-containing protein 19
3swp_B6e-483019722173NAC domain-containing protein 19
3swp_C6e-483019722173NAC domain-containing protein 19
3swp_D6e-483019722173NAC domain-containing protein 19
4dul_A5e-483019719170NAC domain-containing protein 19
4dul_B5e-483019719170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803594.11e-145transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK558e-79NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3L6T4I21e-144A0A3L6T4I2_PANMI; Transcription factor JUNGBRUNNEN 1-like
STRINGSi030477m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]