PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01186.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 230aa    MW: 24785.3 Da    PI: 7.2361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01186.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20170219255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Zmw_sc01186.1.g00010.1.am.mk 170 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 219
                                   7********.**********7.....337************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-33170228IPR001471AP2/ERF domain
PROSITE profilePS5103225.686170227IPR001471AP2/ERF domain
PfamPF008475.7E-14170219IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22170228IPR016177DNA-binding domain
SMARTSM003802.1E-34170230IPR001471AP2/ERF domain
PRINTSPR003675.7E-12171182IPR001471AP2/ERF domain
CDDcd000181.41E-14178229No hitNo description
PRINTSPR003675.7E-12193209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MSAQRNPRFD GIVSTPREDS DLYIWEGRRT VLILHARATL MCFELADPRG SGGAGWSLAK  60
GEGASSEGMA ARAAGSGGLM SDYYQAQEMS TMVSALTHVV AGGATPRGSG REQQAMHGGN  120
AYEIGRYPGA PSPEFAASEQ SSDTQSAGAM EEHHHSASAN TEGPDTPRRR YRGVRQRPWG  180
KWAAEIRDPH KAARVWLGTF ETAEAAARAY DEAALRFRGS RAKLNFPEDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-24169227463ATERF1
3gcc_A5e-24169227463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311254.11e-58ethylene-responsive transcription factor ABR1
SwissprotQ9FH542e-35EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A1E5WKI73e-59A0A1E5WKI7_9POAL; Uncharacterized protein
STRINGGRMZM2G149756_P018e-55(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]