PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01180.1.g00250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 144aa    MW: 15146.1 Da    PI: 9.6976
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01180.1.g00250.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.31e-2373121250
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 
                                   C vegC+adls+ +eyh rhkvCe+hsk+pvv+v+g++qrfCqqCsr+ 
  Zmw_sc01180.1.g00250.1.sm.mk  73 CSVEGCTADLSKGREYHLRHKVCEAHSKTPVVVVAGQQQRFCQQCSRYA 121
                                   ***********************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.9E-2465120IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.49570144IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.36E-2371121IPR004333Transcription factor, SBP-box
PfamPF031107.1E-1873120IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MDWDTKMPSW DLGTVVGPSS GGGGGALDLK LGGPTSWKSA ATAAAVPPPP PSSSSAPAKR  60
PRSGQAHQAV PACSVEGCTA DLSKGREYHL RHKVCEAHSK TPVVVVAGQQ QRFCQQCSRY  120
ARAHARSLIA ANMHYSWIPF PSTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A5e-1672120553squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178580.11e-44squamosa promoter-binding-like protein 2
SwissprotQ0JGI19e-42SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLA0A3S6H6593e-54A0A3S6H659_9POAL; Squamosa-promoter binding protein-like protein
STRINGPavir.Ea03909.1.p5e-48(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]