PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01160.1.g00140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 675aa    MW: 75406.9 Da    PI: 5.273
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01160.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.32.7e-48322051128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k............................. 49 
                                     lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+ePwdLp +                             
  Zmw_sc01160.1.g00140.1.am.mkhc  32 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPgNrircafprffsfarfhlnlllvqdsdaaa 110
                                     699************************9999*****************5489*************************** PP

                             NAM  50 ............kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....kgelvglkktLvfykgr 112
                                                  +++e+ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ + sk    k++++g+kktLvf+kgr
  Zmw_sc01160.1.g00140.1.am.mkhc 111 clpallnlsyksLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIRSKgdkrKQHVIGMKKTLVFHKGR 189
                                     ***9999988765666888**************************************988767777************* PP

                             NAM 113 apkgektdWvmheyrl 128
                                     apkge+t W+mheyr 
  Zmw_sc01160.1.g00140.1.am.mkhc 190 APKGERTGWIMHEYRT 205
                                     **************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-192091IPR003441NAC domain
PROSITE profilePS5100551.0532226IPR003441NAC domain
PfamPF023651.8E-2633204IPR003441NAC domain
SuperFamilySSF1019413.4E-35104226IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
YPPSAANPPR SGRRRISSSH RATMTVMELK ALPLGFRFHP TDEELVRHYL KGKITGQINS  60
EVEVIPEIDV CKCEPWDLPG NRIRCAFPRF FSFARFHLNL LLVQDSDAAA CLPALLNLSY  120
KSLIRSEDPE WFFFAPKDRK YPNGSRSNRA TEAGYWKATG KDRVIRSKGD KRKQHVIGMK  180
KTLVFHKGRA PKGERTGWIM HEYRTTEPEF ECGEQGSYVL YRLFCKQEEK NERLTPEEMD  240
RSGYSPTTPR SSPNNIEANE EAFTPLNKES PESTLHDSPT NLPNSVETHD VSLTRWLVDR  300
TDNLAANAVN VSKTPLNGHI DGIAKVDPSV GGVTQLIDSQ QQHNGDPNHF AAGSAPILQH  360
EENGFFNFQQ GMMGFDGNVN APDAIDEFLN QALTDPDEHS STTSKVQYDS DPGIMAPEFG  420
NHGIMQGELP DDQAWWASLN FDLDEPNSLL PYDTTDPDVL SMDSGAESLH DLFNGWSTDP  480
AVQGTGITIM PRQSQLNVQQ NNLFLRQGIA NRRLRLQEYL SPNVESATNV DCEDKASCTV  540
TSDYLDEAAE ESTAEKGEPY DEDDAESTGI TIRSRHPAPS SSATSSFTQQ GTAVRRLRLQ  600
SDLKTDALKV VSEAKSVPRR RRTSEKNDEI TKQEDGFDSL VRAPGKKRGF QSHLFWLVLS  660
VAVLLLLCVG VYGWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-373122716166NO APICAL MERISTEM PROTEIN
1ut4_B1e-373122716166NO APICAL MERISTEM PROTEIN
1ut7_A1e-373122716166NO APICAL MERISTEM PROTEIN
1ut7_B1e-373122716166NO APICAL MERISTEM PROTEIN
3swm_A1e-373122719169NAC domain-containing protein 19
3swm_B1e-373122719169NAC domain-containing protein 19
3swm_C1e-373122719169NAC domain-containing protein 19
3swm_D1e-373122719169NAC domain-containing protein 19
3swp_A1e-373122719169NAC domain-containing protein 19
3swp_B1e-373122719169NAC domain-containing protein 19
3swp_C1e-373122719169NAC domain-containing protein 19
3swp_D1e-373122719169NAC domain-containing protein 19
4dul_A1e-373122716166NAC domain-containing protein 19
4dul_B1e-373122716166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445085.10.0protein NTM1-like 9 isoform X2
RefseqXP_025820792.10.0protein NTM1-like 9
TrEMBLA0A0A9CTY00.0A0A0A9CTY0_ARUDO; Uncharacterized protein
STRINGSb07g003900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859