PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01153.1.g00300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 283aa    MW: 32148.5 Da    PI: 8.2649
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01153.1.g00300.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.21.5e-44111371128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratks 80 
                                   lppGfr    d+e++v+yLk+k++++ ++++++i++vdiyk++Pw+Lp k+v  +e ew+fFs+r++ky++g r+nr++ s
  Zmw_sc01153.1.g00300.1.sm.mk  11 LPPGFRL---DQEIIVCYLKNKIAATATTVTSIIADVDIYKFDPWELPeKAVVCGEGEWFFFSPRQRKYPNGCRPNRSAGS 88 
                                   6889986...9****************999999***************656666888************************ PP

                           NAM  81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   gyWkatg+dk++l+  +++ +g+kk Lvfy+gr+pkg+kt+Wvmheyrl
  Zmw_sc01153.1.g00300.1.sm.mk  89 GYWKATGTDKPILAGgGSRCIGVKKALVFYQGRSPKGTKTEWVMHEYRL 137
                                   **************856677***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100548.538168IPR003441NAC domain
SuperFamilySSF1019412.22E-518166IPR003441NAC domain
PfamPF023658.7E-2013137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDEGMGGICQ LPPGFRLDQE IIVCYLKNKI AATATTVTSI IADVDIYKFD PWELPEKAVV  60
CGEGEWFFFS PRQRKYPNGC RPNRSAGSGY WKATGTDKPI LAGGGSRCIG VKKALVFYQG  120
RSPKGTKTEW VMHEYRLLDA DDHIVMRRKD SANSMRLDDW VLCRSRNKGS FVVGLPDDMA  180
PADQSRSSPA RTRAEHVEDW IDDQLLQCLI NSNEPELDHS MINRKRKNNH LSFQAMPNYS  240
YKRANNGMLN STAPFRETSF SVSETDELFY HYKYLISTPL QAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-561117017167NO APICAL MERISTEM PROTEIN
1ut4_B4e-561117017167NO APICAL MERISTEM PROTEIN
1ut7_A4e-561117017167NO APICAL MERISTEM PROTEIN
1ut7_B4e-561117017167NO APICAL MERISTEM PROTEIN
3swm_A4e-561117020170NAC domain-containing protein 19
3swm_B4e-561117020170NAC domain-containing protein 19
3swm_C4e-561117020170NAC domain-containing protein 19
3swm_D4e-561117020170NAC domain-containing protein 19
3swp_A4e-561117020170NAC domain-containing protein 19
3swp_B4e-561117020170NAC domain-containing protein 19
3swp_C4e-561117020170NAC domain-containing protein 19
3swp_D4e-561117020170NAC domain-containing protein 19
4dul_A4e-561117017167NAC domain-containing protein 19
4dul_B4e-561117017167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200711.13e-92NAC transcription factor 32-like
SwissprotA0SPJ97e-65NAM2_HORVV; NAC transcription factor NAM-2
TrEMBLA0A3B6GUF82e-92A0A3B6GUF8_WHEAT; Uncharacterized protein
STRINGEMT299657e-89(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137971929
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]