PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01151.1.g00140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 337aa    MW: 36451.1 Da    PI: 4.4026
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01151.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.3e-05175195727
                                     HHHHHHHHHHHHHHHHHHCTS CS
                             HLH   7 erErrRRdriNsafeeLrell 27 
                                     ++ErrRR+r+N++++ Lr+++
  Zmw_sc01151.1.g00140.1.am.mkhc 175 MAERRRRKRLNDRLSMLRSIM 195
                                     79****************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.362168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-11173239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-6174217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-7175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MELDEETFLD ELVSLRREAA AAAPWQAYPG TGSGGVMMSD LLFYGGEGAG TSSGMDLSPF  60
QELPPMAPVP VPPPLPPHPH EEFNFDCLSE VCNPYRSSVA VPGEAVAVGQ SLAPLQDAAL  120
MVEETGGDMG QQYGGGASPT FVFGGQSSEM ANIRAYAGSA HHRSKMHGAP SKNLMAERRR  180
RKRLNDRLSM LRSIMDRISI LGDTIDYVKE LTERIKVLED EMGSSLEDLD LLNTLNDSSD  240
NNNDMIVRNS TKFDVEKRSN GSTRIEICCP ANPGVLLSTV SALEVLGLDI EQCVVSCFSD  300
FGMQASCLQE DGKRQVISTD EIKQALFRSA GYGGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176183ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985797.11e-175transcription factor bHLH61
SwissprotQ9LSL12e-54BH093_ARATH; Transcription factor bHLH93
TrEMBLK4AC631e-173K4AC63_SETIT; Uncharacterized protein
STRINGSi036470m1e-174(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]