PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01129.1.g00230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 640aa    MW: 69980.2 Da    PI: 4.1769
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01129.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.62.5e-49171531128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya........ 69 
                                     l+pGfrFhPtdeelv++yL+++++g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k +        
  Zmw_sc01129.1.g00230.1.sm.mkhc  17 LAPGFRFHPTDEELVSYYLRRRIAGRRLRV-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKITgagaggrg 94 
                                     579***************************.99***************5448999999***********9977777766 PP

                             NAM  70 .tgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                       g+r+nrat +gyWk+tgkd+ev++ +g+ vg+kktLvf++grapkg +t+Wvmheyrl
  Zmw_sc01129.1.g00230.1.sm.mkhc  95 gPGNRTNRATPQGYWKTTGKDREVFH-RGKPVGMKKTLVFHNGRAPKGARTNWVMHEYRL 153
                                     5567**********************.999****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-5514171IPR003441NAC domain
PROSITE profilePS5100555.46217171IPR003441NAC domain
PfamPF023656.8E-2719153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MSNQSLLDSS PPAEVPLAPG FRFHPTDEEL VSYYLRRRIA GRRLRVDAIA EVDLYRLEPW  60
DLPSLSRIRS RDAQWYFFAR LDRKITGAGA GGRGGPGNRT NRATPQGYWK TTGKDREVFH  120
RGKPVGMKKT LVFHNGRAPK GARTNWVMHE YRLLDADGPQ DLHVVCRIFQ KFGSGPQNGA  180
QYGAPYMEEE WEEDDDAIEK GAIIGASTKV AATSDTADEE LNEEEENGDC KTSELAQADE  240
ILNLPVVAAP QAQGLNETSD GSCADDAIFL EEILSSTVNV ENITGPDGQN ATDDNFSAAD  300
FSGCLTKDDG YIGQDGTMNW SLPANGEGTD WPQRAYSNQN PVNETLSADE FFDTGNVTYD  360
NAYSGPQQIC QSDYQNLNLQ ADGFVAQNQV DDGMAFYDAP PIWVDGDNDI YLSDILNEPL  420
ENQSLFEGDG MDYFVDAPEN DFKYDMLGSG EGSDYQLPEM SNFAQKGDYK DESACDGISK  480
TSITNGQYGA SSSGSHDDLY PYDAVPVDGP AGKTFGKHLV NLLDSIPTKT ALAEENPPAT  540
RKSVLNAVSP SSIRVTAGII QLCGLNFTAF EHGPLQKNGD FSLLLSFTMD SDVASKSISF  600
EPATRVGAVP MVMRSGLYLF FVSAMILMLS YKVGLCIYSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-441315311140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817703.10.0NAC domain-containing protein 53-like
TrEMBLA0A3L6RSV20.0A0A3L6RSV2_PANMI; NAC domain-containing protein 53
STRINGPavir.Ab03009.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833