PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01125.1.g00370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 427aa    MW: 46278.3 Da    PI: 7.1824
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01125.1.g00370.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-391972971100
                          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                     +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp  +r++a+ ++ yeA+ar+rdP+yG+v+
  Zmw_sc01125.1.g00370.1.am.mkhc 197 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAVTISYEAQARLRDPIYGCVA 275
                                     7*************************89*************************************************** PP

                          DUF260  79 vilklqqqleqlkaelallkee 100
                                     +i++lqqq+++l+a+la+lk++
  Zmw_sc01125.1.g00370.1.am.mkhc 276 HIFALQQQVMTLQAQLASLKAQ 297
                                     *****************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.574196298IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-37197295IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MPYQKPEPQL EEQDANDVGT CRGSHTCEPP GYSDGLPLSW TTDRPFQGRR TVPALTAGDR  60
VAFEYIRARA VRSCGEYLQA EAVVFYRAHF LANGSEATFI SIRSGGQAAR GRQVHRNTER  120
ILSFHQQIRP ATRPTTELPA SAKAPELPGV APPSSSPRRS TEPRAETHRA SRGKKRAEKP  180
ITVPSEERSE MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS  240
KLLAHLPLAD RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ LASLKAQAAQ  300
GHGGHEDAKG YMGSAAEQLG YGCSWYNNSN GGGGPVDSPA TQPCAYSNGG HESITALLQS  360
DYMQQSLYHA LEQAGSADDD GRQAMDYEAP AESSSFGADE SGWRSSSGYQ DCEDLQSVAY  420
AYLNHRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-321932917104LOB family transfactor Ramosa2.1
5ly0_B3e-321932917104LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797613.11e-141LOB domain-containing protein CRL1-like
SwissprotQ5UG131e-108LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBLA0A2S3IU951e-139A0A2S3IU95_9POAL; Uncharacterized protein
TrEMBLA0A2T7CHM31e-139A0A2T7CHM3_9POAL; Uncharacterized protein
STRINGPavir.Ib00283.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Publications ? help Back to Top
  1. Coudert Y,Périn C,Courtois B,Khong NG,Gantet P
    Genetic control of root development in rice, the model cereal.
    Trends Plant Sci., 2010. 15(4): p. 219-26
    [PMID:20153971]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Coudert Y, et al.
    Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
    BMC Genomics, 2011. 12: p. 387
    [PMID:21806801]