PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01096.1.g00330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 491aa    MW: 53970 Da    PI: 6.7241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01096.1.g00330.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11e-18262312155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++++GVr ++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  Zmw_sc01096.1.g00330.1.am.mk 262 PRFRGVRKRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAVQLRG 312
                                   689*******.**********88.....55***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.22E-28262322No hitNo description
PfamPF008479.2E-11262312IPR001471AP2/ERF domain
SMARTSM003803.2E-33263326IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-20263320IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-28263321IPR001471AP2/ERF domain
PROSITE profilePS5103222.721263320IPR001471AP2/ERF domain
PRINTSPR003678.3E-10264275IPR001471AP2/ERF domain
PRINTSPR003678.3E-10286302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MTRLEIRSEH TLKTKLERVT RGQGPPAQET RPFPDRGCHG KLPANETARG WEITPHVTPA  60
DTWVQAHASR DQSAAAGRIS RSYLSVAYWW VLTGSDRHHS TLPHERRLLP PCVLHLIPIL  120
RLVAPASLSP HLPSLPNPIQ PKRPVSLEEE RFLARDEDMF AAVRRTEHVE LVTTQQRPRA  180
AGPGPRTVRV FCDDYDATDS SGDEEDHARR RVKRYVQEVR LDHPTVMPAK DSSAVKAAAL  240
PSTTTNSARK RNADGRPGSG EPRFRGVRKR PWGKYAAEIR DPWRRVRVWL GTFDTAEEAA  300
KVYDSAAVQL RGSNATTNFQ QASDATHPFP PQPLPAAASK NNASTSSAAA SSHDSGEESV  360
SHGAAAAASP TSVLRSFPPS AVIALAEDVT TACIKTATIT ESNGGLFFGC PFSDDGPFGF  420
PPVYTDFDDL LRAEFLPPDE PSLSLPASFF SPGDVDEERQ QSSSSAPTDK WQQVDDFFQD  480
ITDLFQIDHQ L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-18258319971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967470.16e-93ethylene-responsive transcription factor CRF1
TrEMBLA0A1E5VYG98e-94A0A1E5VYG9_9POAL; Uncharacterized protein
STRINGGRMZM2G142179_P012e-87(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697