PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01091.1.g00180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 349aa    MW: 39914.7 Da    PI: 9.6398
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01091.1.g00180.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.11.2e-51441722128
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                    pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t sg
  Zmw_sc01091.1.g00180.1.am.mk  44 LPGFRFHPTDEELVSFYLRRKVARKPLSV-EIIKEMDIYKHDPWDLPkASTAGGEKEWYFFCLRGRKYRNSIRPNRVTGSG 123
                                   69***************************.89***************556667899************************* PP

                           NAM  82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +Wkatg d++++s+  +g+ +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Zmw_sc01091.1.g00180.1.am.mk 124 FWKATGIDRPIYSAtsSGKSIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 172
                                   ************99888899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.9343199IPR003441NAC domain
SuperFamilySSF1019411.16E-5643199IPR003441NAC domain
PfamPF023654.1E-2545172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MRRWPRRWGW PPVGEGVRRQ ETGRDRRAAE TWSDGDGEED DVVLPGFRFH PTDEELVSFY  60
LRRKVARKPL SVEIIKEMDI YKHDPWDLPK ASTAGGEKEW YFFCLRGRKY RNSIRPNRVT  120
GSGFWKATGI DRPIYSATSS GKSIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPMAAAANS  180
ASPSMQEAEV WTICRIFKRN ITYRRQQQQQ QVWRQPAAAG SNTPPPAYLS SNNGSFESDG  240
SRDEYMNRLP VTAPGISHHQ HVSSHQVNML NAGSSCFLRD SLHSQQWFNL NSLTVPEQKP  300
QVTPAAMTIA FQQNHAANEF SRDGYLEEIA RFMEISDPTS TAFYDCRYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-494519919165NO APICAL MERISTEM PROTEIN
1ut4_B7e-494519919165NO APICAL MERISTEM PROTEIN
1ut7_A7e-494519919165NO APICAL MERISTEM PROTEIN
1ut7_B7e-494519919165NO APICAL MERISTEM PROTEIN
3swm_A7e-494520022169NAC domain-containing protein 19
3swm_B7e-494520022169NAC domain-containing protein 19
3swm_C7e-494520022169NAC domain-containing protein 19
3swm_D7e-494520022169NAC domain-containing protein 19
3swp_A7e-494520022169NAC domain-containing protein 19
3swp_B7e-494520022169NAC domain-containing protein 19
3swp_C7e-494520022169NAC domain-containing protein 19
3swp_D7e-494520022169NAC domain-containing protein 19
4dul_A7e-494519919165NAC domain-containing protein 19
4dul_B7e-494519919165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981565.11e-169transcription factor JUNGBRUNNEN 1
SwissprotQ9SK553e-80NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLK4AC401e-168K4AC40_SETIT; Uncharacterized protein
STRINGSi036447m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]