PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01070.1.g00200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 270aa    MW: 29187.9 Da    PI: 7.3441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01070.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-142273155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  s y+GV+++++ grW A+I  +     +k  +lg++ t e+Aa+a++ a+ k++g
  Zmw_sc01070.1.g00200.1.sm.mk 22 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEDAAEAYDVAAIKFRG 73
                                  57****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-102273IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-182282IPR016177DNA-binding domain
CDDcd000183.37E-242283No hitNo description
PROSITE profilePS5103218.9272381IPR001471AP2/ERF domain
SMARTSM003801.1E-332387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-182381IPR001471AP2/ERF domain
PRINTSPR003677.9E-52435IPR001471AP2/ERF domain
PRINTSPR003677.9E-56383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTRFEYVAHL RRRSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTYSTQEDA  60
AEAYDVAAIK FRGVNAVTNF DITRYDVEKI MESNVLLPGE EARKVKAIVP AMPHNSGWEL  120
NPTGEACTEW RMVVLGSHQE TVAYAEADVL QNGIMGRGGD PNPSMHGVVG LDVECQAQPD  180
LDGSGCRTTG GVSFSNSSTL VISLGNSREG IPAERLGLAM LYNKHPNAAV SLGTISPWTQ  240
MQAPVTASHM LKPPSAAVSH LPVFAGWADA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318293.11e-112AP2-like ethylene-responsive transcription factor ANT isoform X1
RefseqXP_021318295.11e-112AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z029e-68CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0A9LT821e-121A0A0A9LT82_ARUDO; Uncharacterized protein
STRINGSb01g042090.11e-112(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]