PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01063.1.g00220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GeBP
Protein Properties Length: 579aa    MW: 61765.7 Da    PI: 4.8012
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01063.1.g00220.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.21.4e-3486185297
                        DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkep 78 
                                   lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg+ +
  Zmw_sc01063.1.g00220.1.am.mk  86 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMHRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRDSGDAF 166
                                   79************************99877778***************************************8999**** PP

                        DUF573  79 sfskehdqkifelskkiWg 97 
                                   sf+++h+q ife+++ iW+
  Zmw_sc01063.1.g00220.1.am.mk 167 SFRSPHEQAIFEIARNIWR 185
                                   ******************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-3087184IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MSPTGDDPSA TAAAAAPGGT SFPDADGGGD SEDGDFPHAH LLDPSEPGLP DPASSSAAVL  60
PHAVPAGGSG SGGPVTSGNG SERRPLFQRL WTEEDEIVIL RGFAEFTAAR GTAFASHQYD  120
TDPFYEDMHR RLQLDFSKSQ LVEKLRRLKR KYRNCVSRLR DSGDAFSFRS PHEQAIFEIA  180
RNIWRPANKH GRDPAADSDD EDAVASAAAT AVPGSTSPNG KVMSPSSGRQ RRRRRATEAG  240
PAPAPAMNMV QPPQPVQLPV SVPVKMDDSP ALTQTPMPVM VTMDGSEPLR LPAMSPQSGV  300
PDAEKNCLIP LLKDMISAVI NVGVNPFGAK LPELPLGLPM EGEKWRKQRI LELEVYLKRI  360
ELLQDQLPGI ARDVGPGALD RPYGIVMDPC VAMGMSATVR HGGVEARGAD VLLAGALLRL  420
HEARGVVNAN DEVASDLGDQ GAAVAGLLSA EEALDPGDHL VRGRVGGHVE VYDTVAKVLS  480
ERVLERRVAG GEGSLVASAD VELVVVPEEE QPGSGVERQY KGLGLDEVPI SLLLGELQWV  540
SGSDCCFLRL ALLLLGFGLR DEGRDGAVWT TEGWWRRVY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461092.10.0probable transcription factor At3g04930
TrEMBLA0A1E5UXC00.0A0A1E5UXC0_9POAL; Uncharacterized protein
STRINGPavir.Bb03462.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123