PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01062.1.g00150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 530aa    MW: 56480.2 Da    PI: 8.9795
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01062.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.21.9e-12507530124
                          GATA   1 CsnCgttkTplWRrgpdgnktLCn 24 
                                   Cs+Cg+ kTp+WR gp+g ktLCn
  Zmw_sc01062.1.g00150.1.am.mk 507 CSHCGVQKTPQWRAGPEGAKTLCN 530
                                   ***********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501148.774501530IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-7504530No hitNo description
Gene3DG3DSA:3.30.50.106.3E-9505530IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.23E-8506530No hitNo description
PfamPF003203.2E-10507530IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MQHASHPTPP DPVRNGHVCR PARSDDDSAS PAAWNGALII QQARRPQRQR EQEQQFTIFG  60
ARQVQFKSSG PAPHTPPFSK GPIHGSSTSS RRGPPRVGPS ASRRAPLIPC PACRLNLTRP  120
PHASGPSVVP AAGIATRRRA ISVQLPSIER STKRSSLVVS FLPSASSSSP FFSPRERRRH  180
RTGPEFVAPF LPTCAAPAMP SYANNHHSHM DGKMDAMKSN AFPPEEAAEE AANAAALGER  240
DGFSVEDLLD LEEFGEPDKD ETDHQDAAPP PAADETEENS PGDDSQPSSM VTFELPPPPP  300
EMVDLPAHDV EEELEWVSRI MDDSLSEVPP PPQPRAVAGA AVQAARPPLA QRMPYDSAYR  360
ALPPAPPGPP RAPTVCALST EALVPVKAKR SKRSRSSAWS MSGASLFSDS ASSSSTATTS  420
SCSSSSASFS PFFLLDSPPP FGFPDFEGYP HFLPPPAQAR KSSKHGKGSK HKPKKRGRKP  480
KHAPQLTGAA AASAAAASLV AQGERRCSHC GVQKTPQWRA GPEGAKTLCN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151060.19e-99GATA zinc finger family protein
TrEMBLA0A0A9D1L51e-98A0A0A9D1L5_ARUDO; Uncharacterized protein
TrEMBLB6TWI71e-98B6TWI7_MAIZE; GATA zinc finger family protein
STRINGGRMZM2G404973_P035e-90(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108