PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01038.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 593aa    MW: 63657.6 Da    PI: 9.7467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01038.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09420467455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR++i +++  L++++P +    sk   Ka +L + ++Y++sLq
  Zmw_sc01038.1.g00060.1.am.mk 420 SHSLAERVRREKISERMKLLQDIVPGC----SKVTGKAVMLDEIINYVQSLQ 467
                                   8*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16414483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.83E-11414471No hitNo description
PROSITE profilePS5088815.523416466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16416484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-6420467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10422472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MDLKQTAVIL SYAATHCLST AIGWAVTDIE MARGFIGSSD RHYVHATIWS LLPRAPNATT  60
IMWLSEAPNA DRFSVAVGWV SRAQSFEWTV QEGDASWVVS AIKIRTYRTW GVERPSKARP  120
LTPHLDAHFP PPPSSRRQAR THALARAHTY PARSSRTRPG HQPPASRPRL WQRSAMAHDG  180
FPGAFNELPW PLTQAAAASL QAQLPYPLSG AEWEHDAAMI SLVPSPASTV GGAGVHEAVL  240
MEHLASRLGV SMPSPPLPSP SSRYGSCYST PVGSPSKPVN AAANVGFAER AARLPCFTAS  300
NGKLSRVASS QSLLAEQTSS PRGVAPAHGS SSDGPNRKRK AAAGGKSKAK DTMTTATAKS  360
PEAERRAKKS KLSADVGDDD QPRPAAGEAG HGNDKGKELV AESPKDYIHV RARRGQATDS  420
HSLAERVRRE KISERMKLLQ DIVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLSTV  480
NPRLEVDVDS FVQKDANQSC VPAPTSLPQP PPPPVYSTEG SNTAFCYTSS PAPAVPSPVT  540
ANAKSFEPSS LVSHGSIQDH SLEGFENSNP HQIASPWVDD LQSLVQMGFR GNT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703449.11e-149transcription factor bHLH62
TrEMBLA0A3L6Q2U41e-157A0A3L6Q2U4_PANMI; Transcription factor bHLH62-like
STRINGPavir.Ha00788.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532