PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00909.1.g00240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 611aa    MW: 68290.6 Da    PI: 4.7971
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00909.1.g00240.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-5291421128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknra 77 
                                     lp GfrFhPtdeelv +yLk k++g+ +++ evi+e+d++k+ePwdLp k  +++e+ ew+fF+++d+ky++g+r+nra
  Zmw_sc00909.1.g00240.1.sm.mkhc   9 LPLGFRFHPTDEELVRHYLKGKITGQINSEVEVIPEIDVCKCEPWDLPdKsLIRSEDPEWFFFAPKDRKYPNGSRSNRA 87 
                                     699************************9999****************96446677888********************* PP

                             NAM  78 tksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     t++gyWkatgkd+ + sk    k++++g+kktLvf+kgrapkge+t W+mheyr 
  Zmw_sc00909.1.g00240.1.sm.mkhc  88 TEAGYWKATGKDRVIRSKgdkrKQHVIGMKKTLVFHKGRAPKGERTGWIMHEYRT 142
                                     *****************988767777***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-583163IPR003441NAC domain
PROSITE profilePS5100556.5249163IPR003441NAC domain
PfamPF023651.5E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQINSEVE VIPEIDVCKC EPWDLPDKSL  60
IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKRK QHVIGMKKTL  120
VFHKGRAPKG ERTGWIMHEY RTTEPEFECG EQGSYVLYRL FCKQEEKNER LTPEEMDRSG  180
YSPTTPRSSP NNIEANEEAF TPLNKESPES TLHDSPTNLP NSVETHALSL TRWLVDRTDN  240
SAANAVNVSK TPLNGHIDGI AKVDPSVGGV TQLIDSQQQH NGDPNHFAAG SAPILQHEEN  300
GFFNFQQGMM GFDGNVNAPD AIDEFLNQAL TDPDEHSSTT SKVQYDSDPG IMAPEFGNHV  360
IMQGELPDDQ AWWAGLNFDL DEPNSLLPYD TTDPDVLSMD SGAESLHDLF NGWSTEPAVQ  420
GTGITIMPRQ SQSNVQQNNL FLRQGIANRR LRLQEYLSPN VESATNVDCE DKASCTVTSD  480
YLEEATEEST AEKGEPYDED DAESTGNTIR SRHPAPSSSA TSSFTQQGTA VRRLRLQSYL  540
KTDALKAVSE SKSVPRRRRT SEKNDEITKQ EDGFDSLVRA PGKRGFQSHL FWLVLSVAVL  600
LLLCVGVYGW A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-45816419169NAC domain-containing protein 19
3swm_B2e-45816419169NAC domain-containing protein 19
3swm_C2e-45816419169NAC domain-containing protein 19
3swm_D2e-45816419169NAC domain-containing protein 19
3swp_A2e-45816419169NAC domain-containing protein 19
3swp_B2e-45816419169NAC domain-containing protein 19
3swp_C2e-45816419169NAC domain-containing protein 19
3swp_D2e-45816419169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445085.10.0protein NTM1-like 9 isoform X2
TrEMBLA0A0A9CTY00.0A0A0A9CTY0_ARUDO; Uncharacterized protein
STRINGSb07g003900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859