PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00895.1.g00060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 599aa    MW: 64151 Da    PI: 5.4209
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00895.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS77.52.4e-242813832102
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaa 80 
                                   v +L++cA+ +++ d+++a+ +Larl  +asp+g +pm+R+aayf+eALa r++r++++l++  pp+e ++    ++ + a
  Zmw_sc00895.1.g00060.1.sm.mk 281 VGALTACADSLAAYDHQAANYYLARLGMIASPAGpTPMHRVAAYFAEALAIRVVRTWPHLFDVTPPRELTDGAvGDDDAVA 361
                                   678*****************************************************************998887899999* PP

                          GRAS  81 lklfsevsPilkfshltaNqaI 102
                                   l++++ ++Pi++f h+t N+ +
  Zmw_sc00895.1.g00060.1.sm.mk 362 LRVLNAITPIPRFLHFTINERL 383
                                   *******************976 PP

2GRAS1641.2e-50380571183374
                          GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                                    +rled++l++L+vk gE++aVn+vl++hrll ++  +  +  ++L l +s+ + ++ + e+e+ +ns+++ +rf+ al+y
  Zmw_sc00895.1.g00060.1.sm.mk 380 NERLEDVRLWMLHVKGGECVAVNCVLAVHRLLCNENGT--ALADFLGLARSTGAAILLLGEREVALNSGRWEARFACALRY 458
                                   5799***************************9554444..4589************************************* PP

                          GRAS 264 ysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                                   y+a fd++ +a+l+ +s +r+kvE++ ++rei+++va ega+r erhet++ Wr+ +ee+GFk++ l++++a+q +++ r+
  Zmw_sc00895.1.g00060.1.sm.mk 459 YAAAFDAVdAAGLAYTSLARAKVEEM-FAREIRSAVAFEGADRLERHETFAGWRRLMEECGFKNAGLGDREAMQGRMITRM 538
                                   ********9999**************.****************************************************** PP

                          GRAS 344 vksdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                                   ++ + y+v+ +   ++l+l W ++++++vSaW+
  Zmw_sc00895.1.g00060.1.sm.mk 539 FAPRNYSVQAQgdGEALTLQWLNQAMYTVSAWT 571
                                   **888***9654256677**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.73374549IPR005202Transcription factor GRAS
PfamPF035144.2E-48380571IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MELSTCRSLG LAVDAVRALR SGMVAALQQE EDEEEGTEEE ERSGSLPGTS HPAVSRISRM  60
LAGCSFTSSR HHMSTTQRFD ILQCGLSKRS NRGGDGAAAQ RVAAADARTG GATCSFRAHP  120
APPVAQAVSW GAKPEPSGNV AGGGVWERSR AVKRAHEEDV VEEYGGPTVR AKRTRMGSEG  180
DEVWFRQPIA GTVQQAAPGE GEEGDEEKVF LVPSAAAFPH GMAAAGPSMT AAKQEEFSNS  240
PSPASSVGTD GGSSAVPPPD VHARNGVPLT GEVAREAMEL VGALTACADS LAAYDHQAAN  300
YYLARLGMIA SPAGPTPMHR VAAYFAEALA IRVVRTWPHL FDVTPPRELT DGAVGDDDAV  360
ALRVLNAITP IPRFLHFTIN ERLEDVRLWM LHVKGGECVA VNCVLAVHRL LCNENGTALA  420
DFLGLARSTG AAILLLGERE VALNSGRWEA RFACALRYYA AAFDAVDAAG LAYTSLARAK  480
VEEMFAREIR SAVAFEGADR LERHETFAGW RRLMEECGFK NAGLGDREAM QGRMITRMFA  540
PRNYSVQAQG DGEALTLQWL NQAMYTVSAW TPRPTAAQEE ARLSEEERTG FFSGSFALS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-18393570197374GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964401.11e-155PREDICTED: scarecrow-like protein 28
TrEMBLK3Y2011e-155K3Y201_SETIT; Uncharacterized protein
STRINGSi008220m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455