PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00880.1.g00190.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family RAV
Protein Properties Length: 493aa    MW: 53873.3 Da    PI: 10.5042
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00880.1.g00190.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.94.5e-072012292855
                           AP2  28 r.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   + +r++lg+f  + +Aa+a++ a+++++g
  Zmw_sc00880.1.g00190.1.am.mk 201 HhRRVWLGTFAGEADAARAYDVAAQRFRG 229
                                   34**********99*************98 PP

2B398.34.9e-31315408187
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL
  Zmw_sc00880.1.g00190.1.am.mk 315 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 395
                                   89*******************************5556799***************************************** PP

                                   -TT-EEEEEE-SS CS
                            B3  75 kegDfvvFkldgr 87 
                                   ++gD+v F+++ +
  Zmw_sc00880.1.g00190.1.am.mk 396 NAGDVVGFYRSAE 408
                                   *********6654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.749162237IPR001471AP2/ERF domain
SMARTSM003804.8E-9195243IPR001471AP2/ERF domain
PfamPF008471.5E-4199229IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-13199237IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-9200237IPR016177DNA-binding domain
CDDcd000182.96E-12202237No hitNo description
Gene3DG3DSA:2.40.330.101.7E-40308433IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-30313410IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-28313406No hitNo description
PROSITE profilePS5086313.493315424IPR003340B3 DNA binding domain
SMARTSM010197.7E-23315423IPR003340B3 DNA binding domain
PfamPF023621.1E-27315408IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSVTEGDVRG APDVGLATSR HSPGKEYESR RRHFGRVIGG TNSRSNPANW RQRHGSCASA  60
VVFLPALPVP LPLWGVHLAM PWSTLHVKAT LHSLIHQLPH PTHTGGSAVA SSPSFPTPMP  120
HRHRVLSAQV SRCNGDMREH LAKLHANGLV EVGAAAYLDT LNYDARLATH PPTRLYIPLY  180
TPLSCPFHPY APNIFVQRQK HHRRVWLGTF AGEADAARAY DVAAQRFRGR DAVTNFRPLA  240
DADPNAAAEF RFLASRSKAE VVDMLRKHTY FDELAQNRRA FAASAPTTTS SPLAGDHAAG  300
SSLRPSPVAA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH FPLQLPSAGG ESKGVLLNFE  360
DAGGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLNAGDV VGFYRSAESD VADSKLFIDC  420
KLRPNNTTAA SMATPVTVSS PTRVTKAVRL FGVDLLTAPT PESAMAGCKR ARDFAATPPQ  480
AVFKKPLVEL ALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-503084241114B3 domain-containing transcription factor NGA1
5os9_B5e-503084241114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398137.11e-146AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X2
SwissprotQ8RZX91e-142Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A1D6G2Q71e-142A0A1D6G2Q7_MAIZE; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A3L6DRN21e-142A0A3L6DRN2_MAIZE; AP2/ERF and B3 domain-containing protein
STRINGPavir.Eb02845.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203