PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00869.1.g00250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 273aa    MW: 30963.4 Da    PI: 4.9667
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00869.1.g00250.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.25.3e-43101542128
                           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...................kvkaeekewyfFsk 63 
                                   ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp                    ++ +++++w+fFs+
  Zmw_sc00869.1.g00250.1.sm.mk  10 PPGFRFSPTDEELVLYFLKRRISSGRPTP--YIADVDVYKFHPSHLPGtrvfpqsppvlaitrdlmtEI-TGDRQWFFFSR 87 
                                   9*********************9999555..6***************55899*****999988865322.3789******* PP

                           NAM  64 rdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                    d+ky++g+r++r+t +gyWkatg+d+ v+s   +g+ vg kktLv+++grap+ge+tdWvm ey++
  Zmw_sc00869.1.g00250.1.sm.mk  88 LDRKYPNGSRASRTTGDGYWKATGRDRFVCSGgsGGRSVGNKKTLVYHHGRAPRGERTDWVMYEYTI 154
                                   ******************************98778889***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-487177IPR003441NAC domain
PROSITE profilePS5100548.7469177IPR003441NAC domain
PfamPF023653.4E-2310154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MENSPPRRWP PGFRFSPTDE ELVLYFLKRR ISSGRPTPYI ADVDVYKFHP SHLPGTRVFP  60
QSPPVLAITR DLMTEITGDR QWFFFSRLDR KYPNGSRASR TTGDGYWKAT GRDRFVCSGG  120
SGGRSVGNKK TLVYHHGRAP RGERTDWVMY EYTILADALP QAAGAREAYA LYKLFQKSGV  180
GPKNGEQYGA PFREEDWLDD DEEQDLPAGA VIAIGDTCHG DPAGLMNYNS QDADESEFLE  240
IHDFFDLEDV EQTMNCTETE RLRNPEPGIS MYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-381015416140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802095.11e-109NAC domain-containing protein 82-like
SwissprotQ9XIC52e-65NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A2S3H1B91e-107A0A2S3H1B9_9POAL; Uncharacterized protein
STRINGPavir.J04800.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]